The changing face of the molecular evolutionary clock

Trends Ecol Evol. 2014 Sep;29(9):496-503. doi: 10.1016/j.tree.2014.07.004. Epub 2014 Jul 30.

Abstract

The molecular clock has played an important role in biological research, both as a description of the evolutionary process and as a tool for inferring evolutionary timescales. Genomic data have provided valuable insights into the molecular clock, allowing the patterns and causes of evolutionary rate variation to be characterized in increasing detail. I explain how genome sequences offer exciting opportunities for estimating the timescale of the Tree of Life. I describe the different approaches that have been used to deal with the computational and statistical challenges encountered in molecular clock analyses of genomic data. Finally, I offer a perspective on the future of molecular clocks, highlighting some of the key limitations and the most promising research directions.

Keywords: genomic data; molecular clock; pacemaker models; phylogenetic analysis; rate heterogeneity.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Evolution, Molecular*
  • Genetic Drift
  • Genomics
  • Models, Genetic*
  • Mutation Rate*
  • Phylogeny
  • Sequence Analysis, DNA