The XLR sequence family: dispersion on the X and Y chromosomes of a large set of closely related sequences, most of which are pseudogenes

Nucleic Acids Res. 1989 Dec 11;17(23):9871-88. doi: 10.1093/nar/17.23.9871.

Abstract

The XLR sequence family encodes RNA transcripts specific to late-stage T and B cells and their neoplasms. Only one apparently functional mRNA has been identified thus far and this encodes a novel 25 kDa nuclear protein. In this report, we find that the XLR gene family is composed of 50-75 copies per haploid genome which localize to at least two different portions of the mouse X chromosome. Neither of these locations are near the xid mutation that earlier work had correlated with XLR. In addition, some members of this family are also on the Y chromosome. Another surprising finding is that while the fourteen genomic clones examined to date have the same exon-intron structure and are closely related with respect to sequence conservation (90%), all appear (in most cases by multiple criteria) to be non-functional, raising the possibility that all but one of the members of this large semi-dispersed family are pseudogenes.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Animals
  • B-Lymphocytes / physiology
  • Base Sequence
  • Chromosome Mapping
  • Cloning, Molecular
  • Codon / genetics
  • Cosmids
  • Crosses, Genetic
  • Exons
  • Female
  • Liver / metabolism
  • Male
  • Mice
  • Mice, Inbred CBA
  • Multigene Family*
  • Oligonucleotide Probes
  • Pseudogenes*
  • Sequence Homology, Nucleic Acid
  • T-Lymphocytes / physiology
  • Transcription, Genetic*
  • Translocation, Genetic
  • X Chromosome*
  • Y Chromosome*

Substances

  • Codon
  • Oligonucleotide Probes