Large-Scale Conformational Transitions and Dimerization Are Encoded in the Amino-Acid Sequences of Hsp70 Chaperones

PLoS Comput Biol. 2015 Jun 5;11(6):e1004262. doi: 10.1371/journal.pcbi.1004262. eCollection 2015 Jun.

Abstract

Hsp70s are a class of ubiquitous and highly conserved molecular chaperones playing a central role in the regulation of proteostasis in the cell. Hsp70s assist a myriad of cellular processes by binding unfolded or misfolded substrates during a complex biochemical cycle involving large-scale structural rearrangements. Here we show that an analysis of coevolution at the residue level fully captures the characteristic large-scale conformational transitions of this protein family, and predicts an evolutionary conserved-and thus functional-homo-dimeric arrangement. Furthermore, we highlight that the features encoding the Hsp70 dimer are more conserved in bacterial than in eukaryotic sequences, suggesting that the known Hsp70/Hsp110 hetero-dimer is a eukaryotic specialization built on a pre-existing template.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Cattle
  • Dimerization
  • Fungal Proteins / chemistry
  • Fungal Proteins / metabolism
  • HSP70 Heat-Shock Proteins / chemistry*
  • HSP70 Heat-Shock Proteins / metabolism*
  • Humans
  • Models, Molecular
  • Sequence Alignment

Substances

  • Fungal Proteins
  • HSP70 Heat-Shock Proteins

Grants and funding

DM thanks the Swiss National Science Foundation (http://www.snf.ch/) for financial support under grant 2012_149278. AB thanks the Swiss National Science Foundation (http://www.snf.ch/) for financial support under grant PZ00P2_136856. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.