Ubiquitin-specific Protease 15 Negatively Regulates Virus-induced Type I Interferon Signaling via Catalytically-dependent and -independent Mechanisms

Sci Rep. 2015 Jun 10:5:11220. doi: 10.1038/srep11220.

Abstract

Viral infection triggers a series of signaling cascades, which converge to activate the transcription factors nuclear factor-κB (NF-κB) and interferon regulatory factor 3 (IRF3), thereby inducing the transcription of type I interferons (IFNs). Although not fully characterized, these innate antiviral responses are fine-tuned by dynamic ubiquitination and deubiquitination processes. In this study, we report ubiquitin-specific protease (USP) 15 is involved in regulation of the retinoic acid-inducible gene I (RIG-I)-dependent type I IFN induction pathway. Knockdown of endogenous USP15 augmented cellular antiviral responses. Overexpression of USP15 inhibited the transcription of IFN-β. Further analyses identified histidine 862 as a critical residue for USP15's catalytic activity. Interestingly, USP15 specifically removed lysine 63-linked polyubiquitin chains from RIG-I among the essential components in RIG-I-like receptor-dependent pathway. In addition, we demonstrated that in contrast to USP15 de-ubiquitinating (DUB) activity, USP15-mediated inhibition of IFN signaling was not abolished by mutations eliminating the catalytic activity, indicating that a fraction of USP15-mediated IFN antagonism was independent of the DUB activity. Catalytically inactive USP15 mutants, as did the wild-type protein, disrupted virus-induced interaction of RIG-I and IFN-β promoter stimulator 1. Taken together, our data demonstrate that USP15 acts as a negative regulator of RIG-I signaling via DUB-dependent and independent mechanisms.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adaptor Proteins, Signal Transducing / metabolism
  • Amino Acid Sequence
  • Catalysis
  • Catalytic Domain / genetics
  • DEAD Box Protein 58
  • DEAD-box RNA Helicases / metabolism
  • Gene Expression
  • Gene Knockdown Techniques
  • Humans
  • Interferon Type I / antagonists & inhibitors
  • Interferon Type I / metabolism*
  • Molecular Sequence Data
  • Mutation
  • Protein Binding
  • Protein Interaction Domains and Motifs
  • Receptors, Immunologic
  • Signal Transduction*
  • Ubiquitin-Specific Proteases / chemistry
  • Ubiquitin-Specific Proteases / genetics
  • Ubiquitin-Specific Proteases / metabolism*
  • Ubiquitination
  • Virus Physiological Phenomena*

Substances

  • Adaptor Proteins, Signal Transducing
  • Interferon Type I
  • MAVS protein, human
  • Receptors, Immunologic
  • USP15 protein, human
  • Ubiquitin-Specific Proteases
  • RIGI protein, human
  • DEAD Box Protein 58
  • DEAD-box RNA Helicases