SERBP1 affects homologous recombination-mediated DNA repair by regulation of CtIP translation during S phase

Nucleic Acids Res. 2015 Jul 27;43(13):6321-33. doi: 10.1093/nar/gkv592. Epub 2015 Jun 11.

Abstract

DNA double-strand breaks (DSBs) are the most severe type of DNA damage and are primarily repaired by non-homologous end joining (NHEJ) and homologous recombination (HR) in the G1 and S/G2 phase, respectively. Although CtBP-interacting protein (CtIP) is crucial in DNA end resection during HR following DSBs, little is known about how CtIP levels increase in an S phase-specific manner. Here, we show that Serpine mRNA binding protein 1 (SERBP1) regulates CtIP expression at the translational level in S phase. In response to camptothecin-mediated DNA DSBs, CHK1 and RPA2 phosphorylation, which are hallmarks of HR activation, was abrogated in SERBP1-depleted cells. We identified CtIP mRNA as a binding target of SERBP1 using RNA immunoprecipitation-coupled RNA sequencing, and confirmed SERBP1 binding to CtIP mRNA in S phase. SERBP1 depletion resulted in reduction of polysome-associated CtIP mRNA and concomitant loss of CtIP expression in S phase. These effects were reversed by reconstituting cells with wild-type SERBP1, but not by SERBP1 ΔRGG, an RNA binding defective mutant, suggesting regulation of CtIP translation by SERBP1 association with CtIP mRNA. These results indicate that SERBP1 affects HR-mediated DNA repair in response to DNA DSBs by regulation of CtIP translation in S phase.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3' Untranslated Regions
  • Ataxia Telangiectasia Mutated Proteins / metabolism
  • Carrier Proteins / biosynthesis*
  • Carrier Proteins / genetics
  • Carrier Proteins / metabolism
  • Cell Line
  • DNA Breaks, Double-Stranded
  • DNA Repair
  • Endodeoxyribonucleases
  • Gene Expression Regulation*
  • HeLa Cells
  • Humans
  • Nuclear Proteins / biosynthesis*
  • Nuclear Proteins / genetics
  • Nuclear Proteins / metabolism
  • Protein Biosynthesis*
  • RNA, Messenger / metabolism
  • RNA-Binding Proteins / metabolism*
  • RNA-Binding Proteins / physiology
  • Recombinational DNA Repair*
  • S Phase / genetics*
  • Signal Transduction

Substances

  • 3' Untranslated Regions
  • Carrier Proteins
  • Nuclear Proteins
  • RNA, Messenger
  • RNA-Binding Proteins
  • SERBP1 protein, human
  • ATR protein, human
  • Ataxia Telangiectasia Mutated Proteins
  • Endodeoxyribonucleases
  • RBBP8 protein, human