Atomic structure of the APC/C and its mechanism of protein ubiquitination

Nature. 2015 Jun 25;522(7557):450-454. doi: 10.1038/nature14471. Epub 2015 Jun 15.

Abstract

The anaphase-promoting complex (APC/C) is a multimeric RING E3 ubiquitin ligase that controls chromosome segregation and mitotic exit. Its regulation by coactivator subunits, phosphorylation, the mitotic checkpoint complex and interphase early mitotic inhibitor 1 (Emi1) ensures the correct order and timing of distinct cell-cycle transitions. Here we use cryo-electron microscopy to determine atomic structures of APC/C-coactivator complexes with either Emi1 or a UbcH10-ubiquitin conjugate. These structures define the architecture of all APC/C subunits, the position of the catalytic module and explain how Emi1 mediates inhibition of the two E2s UbcH10 and Ube2S. Definition of Cdh1 interactions with the APC/C indicates how they are antagonized by Cdh1 phosphorylation. The structure of the APC/C with UbcH10-ubiquitin reveals insights into the initiating ubiquitination reaction. Our results provide a quantitative framework for the design of future experiments to investigate APC/C functions in vivo.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anaphase-Promoting Complex-Cyclosome / chemistry
  • Anaphase-Promoting Complex-Cyclosome / metabolism*
  • Anaphase-Promoting Complex-Cyclosome / ultrastructure*
  • Antigens, CD
  • Apc1 Subunit, Anaphase-Promoting Complex-Cyclosome / chemistry
  • Apc1 Subunit, Anaphase-Promoting Complex-Cyclosome / metabolism
  • Apc1 Subunit, Anaphase-Promoting Complex-Cyclosome / ultrastructure
  • Apc10 Subunit, Anaphase-Promoting Complex-Cyclosome / chemistry
  • Apc10 Subunit, Anaphase-Promoting Complex-Cyclosome / metabolism
  • Apc10 Subunit, Anaphase-Promoting Complex-Cyclosome / ultrastructure
  • Apc11 Subunit, Anaphase-Promoting Complex-Cyclosome / chemistry
  • Apc11 Subunit, Anaphase-Promoting Complex-Cyclosome / metabolism
  • Apc3 Subunit, Anaphase-Promoting Complex-Cyclosome / chemistry
  • Apc3 Subunit, Anaphase-Promoting Complex-Cyclosome / metabolism
  • Apc8 Subunit, Anaphase-Promoting Complex-Cyclosome / chemistry
  • Apc8 Subunit, Anaphase-Promoting Complex-Cyclosome / metabolism
  • Apc8 Subunit, Anaphase-Promoting Complex-Cyclosome / ultrastructure
  • Cadherins / chemistry
  • Cadherins / metabolism
  • Cadherins / ultrastructure
  • Catalytic Domain
  • Cell Cycle Proteins / chemistry
  • Cell Cycle Proteins / metabolism
  • Cell Cycle Proteins / ultrastructure
  • Cryoelectron Microscopy
  • Cytoskeletal Proteins / chemistry
  • Cytoskeletal Proteins / metabolism
  • F-Box Proteins / chemistry
  • F-Box Proteins / metabolism
  • F-Box Proteins / ultrastructure
  • Humans
  • Lysine / metabolism
  • Models, Molecular
  • Phosphorylation
  • Protein Binding
  • Protein Subunits / chemistry
  • Protein Subunits / metabolism
  • Structure-Activity Relationship
  • Substrate Specificity
  • Ubiquitin / chemistry
  • Ubiquitin / metabolism
  • Ubiquitin / ultrastructure
  • Ubiquitin-Conjugating Enzymes / chemistry
  • Ubiquitin-Conjugating Enzymes / metabolism
  • Ubiquitin-Conjugating Enzymes / ultrastructure
  • Ubiquitination*

Substances

  • ANAPC1 protein, human
  • ANAPC10 protein, human
  • APC2 protein, human
  • Antigens, CD
  • Apc1 Subunit, Anaphase-Promoting Complex-Cyclosome
  • Apc10 Subunit, Anaphase-Promoting Complex-Cyclosome
  • Apc3 Subunit, Anaphase-Promoting Complex-Cyclosome
  • Apc8 Subunit, Anaphase-Promoting Complex-Cyclosome
  • CDC23 protein, human
  • CDC27 protein, human
  • CDH1 protein, human
  • Cadherins
  • Cell Cycle Proteins
  • Cytoskeletal Proteins
  • F-Box Proteins
  • FBXO5 protein, human
  • Protein Subunits
  • Ubiquitin
  • UBE2C protein, human
  • Ube2S protein, human
  • Ubiquitin-Conjugating Enzymes
  • ANAPC11 protein, human
  • Anaphase-Promoting Complex-Cyclosome
  • Apc11 Subunit, Anaphase-Promoting Complex-Cyclosome
  • Lysine

Associated data

  • PDB/4UI9