Validating silicon polytrodes with paired juxtacellular recordings: method and dataset

J Neurophysiol. 2016 Aug 1;116(2):892-903. doi: 10.1152/jn.00103.2016. Epub 2016 Jun 15.

Abstract

Cross-validating new methods for recording neural activity is necessary to accurately interpret and compare the signals they measure. Here we describe a procedure for precisely aligning two probes for in vivo "paired-recordings" such that the spiking activity of a single neuron is monitored with both a dense extracellular silicon polytrode and a juxtacellular micropipette. Our new method allows for efficient, reliable, and automated guidance of both probes to the same neural structure with micrometer resolution. We also describe a new dataset of paired-recordings, which is available online. We propose that our novel targeting system, and ever expanding cross-validation dataset, will be vital to the development of new algorithms for automatically detecting/sorting single-units, characterizing new electrode materials/designs, and resolving nagging questions regarding the origin and nature of extracellular neural signals.

Keywords: extracellular action potential; ground truth; juxtacellular recording; polytrodes; spike sorting.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Action Potentials / physiology*
  • Algorithms
  • Animals
  • Datasets as Topic
  • Electrophysiology / instrumentation*
  • Female
  • Male
  • Microelectrodes*
  • Models, Neurological
  • Nerve Net / physiology*
  • Neurons / physiology*
  • Rats
  • Rats, Long-Evans
  • Signal Processing, Computer-Assisted
  • Silicon / chemistry*

Substances

  • Silicon