A 7 bp mutation converts a human RNA polymerase II snRNA promoter into an RNA polymerase III promoter

Cell. 1989 Jul 14;58(1):55-67. doi: 10.1016/0092-8674(89)90402-9.

Abstract

The human U2 snRNA promoter directs the formation of a specialized RNA polymerase II transcription complex that recognizes the snRNA gene 3' box as a signal for RNA 3' end formation. In contrast, the human U6 promoter is recognized by RNA polymerase III and transcription terminates in a run of Ts. We show that transcription from the U6 promoter is dependent on a sequence similar to the U2 proximal element and on an AT-rich element centered around position -27. Mutation of the AT-rich element induces RNA polymerase II transcription from the U6 promoter, whereas insertion of this element within the U2 promoter converts it into a predominantly RNA polymerase III promoter. The site of transcription termination always correlates with the nature of the transcribing polymerase: the 3' box with RNA polymerase II and a run of Ts with RNA polymerase III. Thus, a single element determines the RNA polymerase specificity of snRNA promoters and hence the site of transcription termination.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Composition
  • Base Sequence
  • DNA Mutational Analysis
  • DNA-Directed RNA Polymerases / metabolism*
  • Humans
  • In Vitro Techniques
  • Molecular Sequence Data
  • Promoter Regions, Genetic*
  • RNA Polymerase II / metabolism*
  • RNA Polymerase III / metabolism*
  • RNA, Small Nuclear / genetics*
  • Structure-Activity Relationship
  • Terminator Regions, Genetic
  • Transcription, Genetic*

Substances

  • RNA, Small Nuclear
  • RNA Polymerase II
  • DNA-Directed RNA Polymerases
  • RNA Polymerase III