Sequential Poly-ubiquitylation by Specialized Conjugating Enzymes Expands the Versatility of a Quality Control Ubiquitin Ligase

Mol Cell. 2016 Sep 1;63(5):827-39. doi: 10.1016/j.molcel.2016.07.020. Epub 2016 Aug 25.

Abstract

The Doa10 quality control ubiquitin (Ub) ligase labels proteins with uniform lysine 48-linked poly-Ub (K48-pUB) chains for proteasomal degradation. Processing of Doa10 substrates requires the activity of two Ub conjugating enzymes. Here we show that the non-canonical conjugating enzyme Ubc6 attaches single Ub molecules not only to lysines but also to hydroxylated amino acids. These Ub moieties serve as primers for subsequent poly-ubiquitylation by Ubc7. We propose that the evolutionary conserved propensity of Ubc6 to mount Ub on diverse amino acids augments the number of ubiquitylation sites within a substrate and thereby increases the target range of Doa10. Our work provides new insights on how the consecutive activity of two specialized conjugating enzymes facilitates the attachment of poly-Ub to very heterogeneous client molecules. Such stepwise ubiquitylation reactions most likely represent a more general cellular phenomenon that extends the versatility yet sustains the specificity of the Ub conjugation system.

MeSH terms

  • Amino Acid Sequence
  • Gene Expression Regulation, Fungal*
  • Humans
  • Hydroxylation
  • Lysine / metabolism
  • Polyubiquitin / genetics
  • Polyubiquitin / metabolism
  • Proteasome Endopeptidase Complex / metabolism
  • Proteolysis
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae / metabolism*
  • Saccharomyces cerevisiae Proteins / genetics
  • Saccharomyces cerevisiae Proteins / metabolism*
  • Sequence Alignment
  • Sequence Homology, Amino Acid
  • Signal Transduction
  • Substrate Specificity
  • Ubiquitin-Conjugating Enzymes / genetics
  • Ubiquitin-Conjugating Enzymes / metabolism*
  • Ubiquitin-Protein Ligases / genetics
  • Ubiquitin-Protein Ligases / metabolism*
  • Ubiquitination

Substances

  • Saccharomyces cerevisiae Proteins
  • Polyubiquitin
  • UBC6 protein, S cerevisiae
  • UBC7 protein, S cerevisiae
  • Ubiquitin-Conjugating Enzymes
  • SSM4 protein, S cerevisiae
  • Ubiquitin-Protein Ligases
  • Proteasome Endopeptidase Complex
  • Lysine