On the Ribosomal Density that Maximizes Protein Translation Rate

PLoS One. 2016 Nov 18;11(11):e0166481. doi: 10.1371/journal.pone.0166481. eCollection 2016.

Abstract

During mRNA translation, several ribosomes attach to the same mRNA molecule simultaneously translating it into a protein. This pipelining increases the protein translation rate. A natural and important question is what ribosomal density maximizes the protein translation rate. Using mathematical models of ribosome flow along both a linear and a circular mRNA molecules we prove that typically the steady-state protein translation rate is maximized when the ribosomal density is one half of the maximal possible density. We discuss the implications of our results to endogenous genes under natural cellular conditions and also to synthetic biology.

Grants and funding

The research of MM and TT is partially supported by research grants from the Israeli Ministry of Science, Technology, and Space, and the US-Israel Binational Science Foundation. The research of MM is also supported by a research grant from the Israel Science Foundation. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.