Functional Genome-wide Screen Identifies Pathways Restricting Central Nervous System Axonal Regeneration

Cell Rep. 2018 Apr 10;23(2):415-428. doi: 10.1016/j.celrep.2018.03.058.

Abstract

Axonal regrowth is crucial for recovery from CNS injury but is severely restricted in adult mammals. We used a genome-wide loss-of-function screen for factors limiting axonal regeneration from cerebral cortical neurons in vitro. Knockdown of 16,007 individual genes identified 580 significant phenotypes. These molecules share no significant overlap with those suggested by previous expression profiles. There is enrichment for genes in pathways related to transport, receptor binding, and cytokine signaling, including Socs4 and Ship2. Among transport-regulating proteins, Rab GTPases are prominent. In vivo assessment with C. elegans validates a cell-autonomous restriction of regeneration by Rab27. Mice lacking Rab27b show enhanced retinal ganglion cell axon regeneration after optic nerve crush and greater motor function and raphespinal sprouting after spinal cord trauma. Thus, a comprehensive functional screen reveals multiple pathways restricting axonal regeneration and neurological recovery after injury.

Keywords: CNS trauma; axon; axonal regeneration; optic nerve regeneration; rab27; shRNA screen; spinal cord injury.

MeSH terms

  • Animals
  • Axons / metabolism*
  • Caenorhabditis elegans / genetics
  • Caenorhabditis elegans / metabolism
  • Caenorhabditis elegans Proteins / antagonists & inhibitors
  • Caenorhabditis elegans Proteins / genetics
  • Caenorhabditis elegans Proteins / metabolism
  • Central Nervous System / physiology*
  • Female
  • Gene Regulatory Networks
  • Genome*
  • Mice
  • Mice, Inbred C57BL
  • Mice, Knockout
  • Nerve Regeneration
  • Optic Nerve / physiology
  • RNA Interference
  • RNA, Small Interfering / metabolism
  • Recovery of Function
  • Retinal Ganglion Cells / metabolism
  • Spinal Cord Injuries / metabolism
  • Spinal Cord Injuries / pathology
  • Suppressor of Cytokine Signaling Proteins / antagonists & inhibitors
  • Suppressor of Cytokine Signaling Proteins / genetics
  • Suppressor of Cytokine Signaling Proteins / metabolism
  • rab GTP-Binding Proteins / antagonists & inhibitors
  • rab GTP-Binding Proteins / deficiency
  • rab GTP-Binding Proteins / genetics
  • rab GTP-Binding Proteins / metabolism

Substances

  • Caenorhabditis elegans Proteins
  • RNA, Small Interfering
  • Suppressor of Cytokine Signaling Proteins
  • Rab27b protein, mouse
  • rab GTP-Binding Proteins