Single-Cell Transcriptomic Profiling of Pluripotent Stem Cell-Derived SCGB3A2+ Airway Epithelium

Stem Cell Reports. 2018 May 8;10(5):1579-1595. doi: 10.1016/j.stemcr.2018.03.013. Epub 2018 Apr 12.

Abstract

Lung epithelial lineages have been difficult to maintain in pure form in vitro, and lineage-specific reporters have proven invaluable for monitoring their emergence from cultured pluripotent stem cells (PSCs). However, reporter constructs for tracking proximal airway lineages generated from PSCs have not been previously available, limiting the characterization of these cells. Here, we engineer mouse and human PSC lines carrying airway secretory lineage reporters that facilitate the tracking, purification, and profiling of this lung subtype. Through bulk and single-cell-based global transcriptomic profiling, we find PSC-derived airway secretory cells are susceptible to phenotypic plasticity exemplified by the tendency to co-express both a proximal airway secretory program as well as an alveolar type 2 cell program, which can be minimized by inhibiting endogenous Wnt signaling. Our results provide global profiles of engineered lung cell fates, a guide for improving their directed differentiation, and a human model of the developing airway.

Keywords: airway; alveoli; directed differentiation; lung epithelium; pluripotent stem cells; single-cell RNA sequencing.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cell Differentiation / genetics
  • Cell Line
  • Cell Lineage
  • Cell Plasticity
  • Epithelium / metabolism*
  • Epithelium / ultrastructure
  • Gene Expression Profiling*
  • Genes, Reporter
  • Humans
  • Induced Pluripotent Stem Cells / cytology
  • Induced Pluripotent Stem Cells / metabolism*
  • Kinetics
  • Lung / cytology*
  • Mice
  • Secretoglobins / metabolism
  • Sequence Analysis, RNA
  • Single-Cell Analysis*
  • Solubility
  • Spheroids, Cellular / cytology
  • Spheroids, Cellular / metabolism
  • Time Factors
  • Transcriptome / genetics
  • Wnt Signaling Pathway

Substances

  • SCGB3A2 protein, human
  • Secretoglobins