Stress Induces Dynamic, Cytotoxicity-Antagonizing TDP-43 Nuclear Bodies via Paraspeckle LncRNA NEAT1-Mediated Liquid-Liquid Phase Separation

Mol Cell. 2020 Aug 6;79(3):443-458.e7. doi: 10.1016/j.molcel.2020.06.019. Epub 2020 Jul 9.

Abstract

Despite the prominent role of TDP-43 in neurodegeneration, its physiological and pathological functions are not fully understood. Here, we report an unexpected role of TDP-43 in the formation of dynamic, reversible, liquid droplet-like nuclear bodies (NBs) in response to stress. Formation of NBs alleviates TDP-43-mediated cytotoxicity in mammalian cells and fly neurons. Super-resolution microscopy reveals distinct functions of the two RRMs in TDP-43 NB formation. TDP-43 NBs are partially colocalized with nuclear paraspeckles, whose scaffolding lncRNA NEAT1 is dramatically upregulated in stressed neurons. Moreover, increase of NEAT1 promotes TDP-43 liquid-liquid phase separation (LLPS) in vitro. Finally, we discover that the ALS-associated mutation D169G impairs the NEAT1-mediated TDP-43 LLPS and NB assembly, causing excessive cytoplasmic translocation of TDP-43 to form stress granules, which become phosphorylated TDP-43 cytoplasmic foci upon prolonged stress. Together, our findings suggest a stress-mitigating role and mechanism of TDP-43 NBs, whose dysfunction may be involved in ALS pathogenesis.

Keywords: ALS; TDP-43; lncRNA NEAT1; nuclear body; paraspeckle; phase separation; stress granules.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amyotrophic Lateral Sclerosis / genetics*
  • Amyotrophic Lateral Sclerosis / metabolism
  • Amyotrophic Lateral Sclerosis / pathology
  • Animals
  • Animals, Genetically Modified
  • Arsenites / pharmacology
  • Cerebral Cortex / drug effects
  • Cerebral Cortex / metabolism
  • Cerebral Cortex / ultrastructure
  • Cytoplasmic Granules / drug effects
  • Cytoplasmic Granules / metabolism
  • Cytoplasmic Granules / ultrastructure
  • DNA-Binding Proteins / genetics*
  • DNA-Binding Proteins / metabolism
  • Disease Models, Animal
  • Drosophila melanogaster
  • Gene Expression Regulation
  • HEK293 Cells
  • HeLa Cells
  • Humans
  • Intranuclear Inclusion Bodies / drug effects
  • Intranuclear Inclusion Bodies / metabolism*
  • Intranuclear Inclusion Bodies / ultrastructure
  • Mice
  • Mutation
  • Neurons / drug effects
  • Neurons / metabolism*
  • Neurons / ultrastructure
  • Primary Cell Culture
  • Protein Transport / drug effects
  • RNA, Long Noncoding / genetics*
  • RNA, Long Noncoding / metabolism
  • Signal Transduction
  • Stress, Physiological

Substances

  • Arsenites
  • DNA-Binding Proteins
  • NEAT1 long non-coding RNA, human
  • RNA, Long Noncoding
  • TARDBP protein, human
  • arsenite