Construction and evaluation of the kinetic scheme associated with dihydrofolate reductase from Escherichia coli

Biochemistry. 1987 Jun 30;26(13):4085-92. doi: 10.1021/bi00387a052.

Abstract

A kinetic scheme is presented for Escherichia coli dihydrofolate reductase that predicts steady-state kinetic parameters and full time course kinetics under a variety of substrate concentrations and pHs. This scheme was derived from measuring association and dissociation rate constants and pre-steady-state transients by using stopped-flow fluorescence and absorbance spectroscopy. The binding kinetics suggest that during steady-state turnover product dissociation follows a specific, preferred pathway in which tetrahydrofolate (H4F) dissociation occurs after NADPH replaces NADP+ in the ternary complex. This step, H4F dissociation from the E X NADPH X H4F ternary complex, is proposed to be the rate-limiting step for steady-state turnover at low pH because koff = VM. The rate constant for hydride transfer from NADPH to dihydrofolate (H2F), measured by pre-steady-state transients, has a deuterium isotope effect of 3 and is rapid, khyd = 950 s-1, essentially irreversible, Keq = 1700, and pH dependent, pKa = 6.5, reflecting ionization of a single group in the active site. This scheme accounts for the apparent pKa = 8.4 observed in the steady state as due to a change in the rate-determining step from product release at low pH to hydride transfer above pH 8.4. This kinetic scheme is a necessary background to analyze the effects of single amino acid substitutions on individual rate constants.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Binding Sites
  • Binding, Competitive
  • Dose-Response Relationship, Drug
  • Escherichia coli / enzymology*
  • Evaluation Studies as Topic
  • Folic Acid / analogs & derivatives
  • Folic Acid / pharmacology
  • Hydrogen-Ion Concentration
  • Mutation
  • NADP / pharmacology
  • Spectrometry, Fluorescence / methods
  • Tetrahydrofolate Dehydrogenase / pharmacokinetics*

Substances

  • dihydrofolate
  • NADP
  • Folic Acid
  • Tetrahydrofolate Dehydrogenase