A pre-transition-state mimic of an enzyme: X-ray structure of adenosine deaminase with bound 1-deazaadenosine and zinc-activated water

Biochemistry. 1993 Feb 23;32(7):1689-94. doi: 10.1021/bi00058a001.

Abstract

The refined 2.4-A structure of adenosine deaminase, recently discovered to be a zinc metalloenzyme [Wilson, D. K., Rudolph, F. B., & Quiocho, F. A. (1991) Science 252, 1278-1284], complexed with the ground-state analog 1-deazaadenosine shows the mode of binding of the analog and, unexpectedly, a zinc-activated water (hydroxide). This structure of a pre-transition-state mimic, combined with that previously determined for the complex with 6(R)-hydroxy-1,6-dihydropurine ribonucleoside, a nearly ideal transition-state analog, sheds new understanding of the precise stereospecificity and hydrolytic catalysis of an important and well-characterized member of a large group of zinc metalloenzymes. As both of these excellent mimics were generated in the active site, they demonstrate a powerful means of dissecting the course of an enzymatic reaction by direct crystallographic analysis.

MeSH terms

  • Adenosine Deaminase / chemistry*
  • Adenosine Deaminase / metabolism
  • Animals
  • Binding Sites
  • Chemical Phenomena
  • Chemistry, Physical
  • Crystallization
  • Escherichia coli / enzymology
  • Hydrogen Bonding
  • Hydrogen-Ion Concentration
  • Mice
  • Molecular Structure
  • Tubercidin / metabolism*
  • Water / chemistry
  • Water / metabolism*
  • X-Ray Diffraction*
  • Zinc / chemistry
  • Zinc / metabolism*

Substances

  • Water
  • 1-deazaadenosine
  • Adenosine Deaminase
  • Zinc
  • Tubercidin