Molecular analysis of the cDNA and genomic DNA encoding mouse RNA helicase A

Genomics. 1998 Feb 1;47(3):365-71. doi: 10.1006/geno.1997.5139.

Abstract

RNA helicase A is an enzyme that possesses both RNA and DNA helicase activities. In this report, we describe the isolation of a mouse cDNA encoding RNA helicase A. The deduced amino acid sequence derived from mouse RNA helicase A cDNA exhibits 87 and 47% identity to its human and Drosophila homologs, respectively. Using Southern blot analysis employing a mouse backcross panel, we have assigned the mouse RNA helicase A gene to chromosome 1, mapping near the D1Bir20 locus at MGD position 67. Northern blot and primer extension analyses indicate that, although its level is variable, RNA helicase A appears to be expressed from a single transcription start site in all tissues tested. Sequence analysis of the upstream genomic DNA revealed that the promoter region lacks a TATA box and contains two high-affinity sites for Sp1, one ISRE, a binding site for interferon regulatory factor, and three AP2-binding sites. These findings suggest that the transcriptional regulation of the RNA helicase A gene is complex.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Chromosome Mapping
  • DNA / isolation & purification*
  • DNA, Complementary / isolation & purification*
  • Exons
  • Introns
  • Mice
  • Mice, Inbred C57BL
  • Molecular Sequence Data
  • Organ Specificity / genetics
  • RNA Helicases
  • RNA Nucleotidyltransferases / genetics*
  • RNA Nucleotidyltransferases / isolation & purification
  • RNA, Messenger / analysis
  • Regulatory Sequences, Nucleic Acid
  • Sequence Analysis, DNA

Substances

  • DNA, Complementary
  • RNA, Messenger
  • DNA
  • RNA Nucleotidyltransferases
  • RNA Helicases

Associated data

  • GENBANK/AF023530
  • GENBANK/U91922