Functional protein domains from the thermally driven motion of polypeptide chains: a proposal

Proteins. 1998 Aug 1;32(2):223-8.

Abstract

It is proposed that the thermally driven motion of certain polypeptide chains, including those that are part of an otherwise stable folded protein, produces time-averaged three-dimensional domains that confer unique functions to a protein. These domains may be controlled by collapsing the polypeptide into an enthalpically favored structure, or extending it into an entropically dominated form. In the extended form, these domains occupy a relatively large space, which may be used to regulate protein-protein interactions and confer mechanical properties to proteins. This "entropic bristle" model makes several predictions about the structure and properties of these domains, and the predictions are used to reevaluate a range of biophysical studies on proteins. The outcome of the analysis suggests that the entropic bristle can be used to explain a wide range of disparate and apparently unrelated experimental observations.

MeSH terms

  • Allosteric Regulation
  • Binding Sites
  • Crystallization
  • Entropy
  • Enzyme Activation
  • Glycosylation
  • Hydrogen-Ion Concentration
  • Kinetics
  • Models, Chemical
  • Molecular Weight
  • Peptides / chemistry*
  • Phosphorylation
  • Protein Conformation*
  • Protein Folding*
  • Stochastic Processes
  • Structure-Activity Relationship
  • Temperature

Substances

  • Peptides