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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1995 2
1996 1
1998 1
2000 1
2001 1
2002 2
2004 1
2005 3
2010 1
2013 1
2014 1
2016 1
2017 1
2019 1
2021 3
2022 1
2024 0

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21 results

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Page 1
Twelve years of SAMtools and BCFtools.
Danecek P, Bonfield JK, Liddle J, Marshall J, Ohan V, Pollard MO, Whitwham A, Keane T, McCarthy SA, Davies RM, Li H. Danecek P, et al. Among authors: bonfield jk. Gigascience. 2021 Feb 16;10(2):giab008. doi: 10.1093/gigascience/giab008. Gigascience. 2021. PMID: 33590861 Free PMC article.
GA4GH: International policies and standards for data sharing across genomic research and healthcare.
Rehm HL, Page AJH, Smith L, Adams JB, Alterovitz G, Babb LJ, Barkley MP, Baudis M, Beauvais MJS, Beck T, Beckmann JS, Beltran S, Bernick D, Bernier A, Bonfield JK, Boughtwood TF, Bourque G, Bowers SR, Brookes AJ, Brudno M, Brush MH, Bujold D, Burdett T, Buske OJ, Cabili MN, Cameron DL, Carroll RJ, Casas-Silva E, Chakravarty D, Chaudhari BP, Chen SH, Cherry JM, Chung J, Cline M, Clissold HL, Cook-Deegan RM, Courtot M, Cunningham F, Cupak M, Davies RM, Denisko D, Doerr MJ, Dolman LI, Dove ES, Dursi LJ, Dyke SOM, Eddy JA, Eilbeck K, Ellrott KP, Fairley S, Fakhro KA, Firth HV, Fitzsimons MS, Fiume M, Flicek P, Fore IM, Freeberg MA, Freimuth RR, Fromont LA, Fuerth J, Gaff CL, Gan W, Ghanaim EM, Glazer D, Green RC, Griffith M, Griffith OL, Grossman RL, Groza T, Auvil JMG, Guigó R, Gupta D, Haendel MA, Hamosh A, Hansen DP, Hart RK, Hartley DM, Haussler D, Hendricks-Sturrup RM, Ho CWL, Hobb AE, Hoffman MM, Hofmann OM, Holub P, Hsu JS, Hubaux JP, Hunt SE, Husami A, Jacobsen JO, Jamuar SS, Janes EL, Jeanson F, Jené A, Johns AL, Joly Y, Jones SJM, Kanitz A, Kato K, Keane TM, Kekesi-Lafrance K, Kelleher J, Kerry G, Khor SS, Knoppers BM, Konopko MA, Kosaki K, Kuba M, Lawson J, Leinonen … See abstract for full author list ➔ Rehm HL, et al. Among authors: bonfield jk. Cell Genom. 2021 Nov 10;1(2):100029. doi: 10.1016/j.xgen.2021.100029. Cell Genom. 2021. PMID: 35072136 Free PMC article.
CRAM 3.1: advances in the CRAM file format.
Bonfield JK. Bonfield JK. Bioinformatics. 2022 Mar 4;38(6):1497-1503. doi: 10.1093/bioinformatics/btac010. Bioinformatics. 2022. PMID: 34999766 Free PMC article.
The Staden package, 1998.
Staden R, Beal KF, Bonfield JK. Staden R, et al. Among authors: bonfield jk. Methods Mol Biol. 2000;132:115-30. doi: 10.1385/1-59259-192-2:115. Methods Mol Biol. 2000. PMID: 10547834 No abstract available.
The Scramble conversion tool.
Bonfield JK. Bonfield JK. Bioinformatics. 2014 Oct;30(19):2818-9. doi: 10.1093/bioinformatics/btu390. Epub 2014 Jun 14. Bioinformatics. 2014. PMID: 24930138 Free PMC article.
Comparison of high-throughput sequencing data compression tools.
Numanagić I, Bonfield JK, Hach F, Voges J, Ostermann J, Alberti C, Mattavelli M, Sahinalp SC. Numanagić I, et al. Among authors: bonfield jk. Nat Methods. 2016 Dec;13(12):1005-1008. doi: 10.1038/nmeth.4037. Epub 2016 Oct 24. Nat Methods. 2016. PMID: 27776113
Compression of FASTQ and SAM format sequencing data.
Bonfield JK, Mahoney MV. Bonfield JK, et al. PLoS One. 2013;8(3):e59190. doi: 10.1371/journal.pone.0059190. Epub 2013 Mar 22. PLoS One. 2013. PMID: 23533605 Free PMC article.
De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms.
Giordano F, Aigrain L, Quail MA, Coupland P, Bonfield JK, Davies RM, Tischler G, Jackson DK, Keane TM, Li J, Yue JX, Liti G, Durbin R, Ning Z. Giordano F, et al. Among authors: bonfield jk. Sci Rep. 2017 Jun 21;7(1):3935. doi: 10.1038/s41598-017-03996-z. Sci Rep. 2017. PMID: 28638050 Free PMC article.
21 results