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Reagent and laboratory contamination can critically impact sequence-based microbiome analyses.
BMC Biol. 2014 Nov 12;12:87. doi: 10.1186/s12915-014-0087-z.
BMC Biol. 2014.
PMID: 25387460
Free PMC article.
Disinfection exhibits systematic impacts on the drinking water microbiome.
Dai Z, Sevillano-Rivera MC, Calus ST, Bautista-de Los Santos QM, Eren AM, van der Wielen PWJJ, Ijaz UZ, Pinto AJ.
Dai Z, et al. Among authors: calus st.
Microbiome. 2020 Mar 20;8(1):42. doi: 10.1186/s40168-020-00813-0.
Microbiome. 2020.
PMID: 32197656
Free PMC article.
Item in Clipboard
NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform.
Calus ST, Ijaz UZ, Pinto AJ.
Calus ST, et al.
Gigascience. 2018 Dec 1;7(12):giy140. doi: 10.1093/gigascience/giy140.
Gigascience. 2018.
PMID: 30476081
Free PMC article.
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Mycobacterial dihydrofolate reductase inhibitors identified using chemogenomic methods and in vitro validation.
Mugumbate G, Abrahams KA, Cox JA, Papadatos G, van Westen G, Lelièvre J, Calus ST, Loman NJ, Ballell L, Barros D, Overington JP, Besra GS.
Mugumbate G, et al. Among authors: calus st.
PLoS One. 2015 Mar 23;10(3):e0121492. doi: 10.1371/journal.pone.0121492. eCollection 2015.
PLoS One. 2015.
PMID: 25799414
Free PMC article.
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Extensive Modulation of the Fecal Metagenome in Children With Crohn's Disease During Exclusive Enteral Nutrition.
Quince C, Ijaz UZ, Loman N, Eren AM, Saulnier D, Russell J, Haig SJ, Calus ST, Quick J, Barclay A, Bertz M, Blaut M, Hansen R, McGrogan P, Russell RK, Edwards CA, Gerasimidis K.
Quince C, et al. Among authors: calus st.
Am J Gastroenterol. 2015 Dec;110(12):1718-29; quiz 1730. doi: 10.1038/ajg.2015.357. Epub 2015 Nov 3.
Am J Gastroenterol. 2015.
PMID: 26526081
Free PMC article.
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The distinct features of microbial 'dysbiosis' of Crohn's disease do not occur to the same extent in their unaffected, genetically-linked kindred.
Ijaz UZ, Quince C, Hanske L, Loman N, Calus ST, Bertz M, Edwards CA, Gaya DR, Hansen R, McGrogan P, Russell RK, Gerasimidis K.
Ijaz UZ, et al. Among authors: calus st.
PLoS One. 2017 Feb 21;12(2):e0172605. doi: 10.1371/journal.pone.0172605. eCollection 2017.
PLoS One. 2017.
PMID: 28222161
Free PMC article.
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Staphylococcal species heterogeneity in the nasal microbiome following antibiotic prophylaxis revealed by tuf gene deep sequencing.
McMurray CL, Hardy KJ, Calus ST, Loman NJ, Hawkey PM.
McMurray CL, et al. Among authors: calus st.
Microbiome. 2016 Dec 2;4(1):63. doi: 10.1186/s40168-016-0210-1.
Microbiome. 2016.
PMID: 27912796
Free PMC article.
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