Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My NCBI Filters

Results by year

Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1977 2
1978 1
1979 1
1981 1
1983 1
1985 1
1986 3
1988 2
1989 3
1990 5
1991 2
1992 1
1993 3
1994 5
1995 4
1996 2
1997 5
1998 6
1999 2
2000 8
2001 8
2002 8
2003 15
2004 11
2005 5
2006 11
2007 12
2008 13
2009 6
2010 6
2011 10
2012 6
2013 8
2014 5
2015 12
2016 13
2017 4
2018 13
2019 8
2020 11
2021 5
2022 4
2023 6
2024 2

Text availability

Article attribute

Article type

Publication date

Search Results

245 results

Results by year

Filters applied: . Clear all
Page 1
Classical molecular dynamics.
Brooks CL 3rd, Case DA, Plimpton S, Roux B, van der Spoel D, Tajkhorshid E. Brooks CL 3rd, et al. Among authors: case da. J Chem Phys. 2021 Mar 14;154(10):100401. doi: 10.1063/5.0045455. J Chem Phys. 2021. PMID: 33722022 No abstract available.
AmberTools.
Case DA, Aktulga HM, Belfon K, Cerutti DS, Cisneros GA, Cruzeiro VWD, Forouzesh N, Giese TJ, Götz AW, Gohlke H, Izadi S, Kasavajhala K, Kaymak MC, King E, Kurtzman T, Lee TS, Li P, Liu J, Luchko T, Luo R, Manathunga M, Machado MR, Nguyen HM, O'Hearn KA, Onufriev AV, Pan F, Pantano S, Qi R, Rahnamoun A, Risheh A, Schott-Verdugo S, Shajan A, Swails J, Wang J, Wei H, Wu X, Wu Y, Zhang S, Zhao S, Zhu Q, Cheatham TE 3rd, Roe DR, Roitberg A, Simmerling C, York DM, Nagan MC, Merz KM Jr. Case DA, et al. J Chem Inf Model. 2023 Oct 23;63(20):6183-6191. doi: 10.1021/acs.jcim.3c01153. Epub 2023 Oct 8. J Chem Inf Model. 2023. PMID: 37805934 Free PMC article.
Development and testing of a general amber force field.
Wang J, Wolf RM, Caldwell JW, Kollman PA, Case DA. Wang J, et al. Among authors: case da. J Comput Chem. 2004 Jul 15;25(9):1157-74. doi: 10.1002/jcc.20035. J Comput Chem. 2004. PMID: 15116359
Generalized Born Implicit Solvent Models for Biomolecules.
Onufriev AV, Case DA. Onufriev AV, et al. Among authors: case da. Annu Rev Biophys. 2019 May 6;48:275-296. doi: 10.1146/annurev-biophys-052118-115325. Epub 2019 Mar 11. Annu Rev Biophys. 2019. PMID: 30857399 Free PMC article. Review.
Chemical shifts in biomolecules.
Case DA. Case DA. Curr Opin Struct Biol. 2013 Apr;23(2):172-6. doi: 10.1016/j.sbi.2013.01.007. Epub 2013 Feb 17. Curr Opin Struct Biol. 2013. PMID: 23422068 Free PMC article. Review.
Advanced Potential Energy Surfaces for Molecular Simulation.
Albaugh A, Boateng HA, Bradshaw RT, Demerdash ON, Dziedzic J, Mao Y, Margul DT, Swails J, Zeng Q, Case DA, Eastman P, Wang LP, Essex JW, Head-Gordon M, Pande VS, Ponder JW, Shao Y, Skylaris CK, Todorov IT, Tuckerman ME, Head-Gordon T. Albaugh A, et al. Among authors: case da. J Phys Chem B. 2016 Sep 22;120(37):9811-32. doi: 10.1021/acs.jpcb.6b06414. J Phys Chem B. 2016. PMID: 27513316 Free PMC article. Review.
Force fields for protein simulations.
Ponder JW, Case DA. Ponder JW, et al. Among authors: case da. Adv Protein Chem. 2003;66:27-85. doi: 10.1016/s0065-3233(03)66002-x. Adv Protein Chem. 2003. PMID: 14631816 Review. No abstract available.
Molecular Dynamics Simulations of Macromolecular Crystals.
Cerutti DS, Case DA. Cerutti DS, et al. Among authors: case da. Wiley Interdiscip Rev Comput Mol Sci. 2019 Jul-Aug;9(4):e1402. doi: 10.1002/wcms.1402. Epub 2018 Nov 16. Wiley Interdiscip Rev Comput Mol Sci. 2019. PMID: 31662799 Free PMC article.
245 results