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Page 1
Imputation of ancient human genomes.
Sousa da Mota B, Rubinacci S, Cruz Dávalos DI, G Amorim CE, Sikora M, Johannsen NN, Szmyt MH, Włodarczak P, Szczepanek A, Przybyła MM, Schroeder H, Allentoft ME, Willerslev E, Malaspinas AS, Delaneau O. Sousa da Mota B, et al. Among authors: cruz davalos di. Nat Commun. 2023 Jun 20;14(1):3660. doi: 10.1038/s41467-023-39202-0. Nat Commun. 2023. PMID: 37339987 Free PMC article.
Structural variant calling: the long and the short of it.
Mahmoud M, Gobet N, Cruz-Dávalos DI, Mounier N, Dessimoz C, Sedlazeck FJ. Mahmoud M, et al. Among authors: cruz davalos di. Genome Biol. 2019 Nov 20;20(1):246. doi: 10.1186/s13059-019-1828-7. Genome Biol. 2019. PMID: 31747936 Free PMC article. Review.
Mapache: a flexible pipeline to map ancient DNA.
Neuenschwander S, Cruz Dávalos DI, Anchieri L, Sousa da Mota B, Bozzi D, Rubinacci S, Delaneau O, Rasmussen S, Malaspinas AS. Neuenschwander S, et al. Among authors: cruz davalos di. Bioinformatics. 2023 Feb 3;39(2):btad028. doi: 10.1093/bioinformatics/btad028. Bioinformatics. 2023. PMID: 36637197 Free PMC article.
The genomic history of the Aegean palatial civilizations.
Clemente F, Unterländer M, Dolgova O, Amorim CEG, Coroado-Santos F, Neuenschwander S, Ganiatsou E, Cruz Dávalos DI, Anchieri L, Michaud F, Winkelbach L, Blöcher J, Arizmendi Cárdenas YO, Sousa da Mota B, Kalliga E, Souleles A, Kontopoulos I, Karamitrou-Mentessidi G, Philaniotou O, Sampson A, Theodorou D, Tsipopoulou M, Akamatis I, Halstead P, Kotsakis K, Urem-Kotsou D, Panagiotopoulos D, Ziota C, Triantaphyllou S, Delaneau O, Jensen JD, Moreno-Mayar JV, Burger J, Sousa VC, Lao O, Malaspinas AS, Papageorgopoulou C. Clemente F, et al. Among authors: cruz davalos di. Cell. 2021 May 13;184(10):2565-2586.e21. doi: 10.1016/j.cell.2021.03.039. Epub 2021 Apr 29. Cell. 2021. PMID: 33930288 Free PMC article.
In-solution Y-chromosome capture-enrichment on ancient DNA libraries.
Cruz-Dávalos DI, Nieves-Colón MA, Sockell A, Poznik GD, Schroeder H, Stone AC, Bustamante CD, Malaspinas AS, Ávila-Arcos MC. Cruz-Dávalos DI, et al. BMC Genomics. 2018 Aug 14;19(1):608. doi: 10.1186/s12864-018-4945-x. BMC Genomics. 2018. PMID: 30107783 Free PMC article.
The ancestry and geographical origins of St Helena's liberated Africans.
Sandoval-Velasco M, Jagadeesan A, Ramos-Madrigal J, Ávila-Arcos MC, Fortes-Lima CA, Watson J, Johannesdóttir E, Cruz-Dávalos DI, Gopalakrishnan S, Moreno-Mayar JV, Niemann J, Renaud G, Robson Brown KA, Bennett H, Pearson A, Helgason A, Gilbert MTP, Schroeder H. Sandoval-Velasco M, et al. Among authors: cruz davalos di. Am J Hum Genet. 2023 Sep 7;110(9):1590-1599. doi: 10.1016/j.ajhg.2023.08.001. Am J Hum Genet. 2023. PMID: 37683613 Free PMC article.
The ancestry and geographical origins of St Helena's liberated Africans.
Sandoval-Velasco M, Jagadeesan A, Ramos-Madrigal J, Ávila-Arcos MC, Fortes-Lima CA, Watson J, Johannesdóttir E, Cruz-Dávalos DI, Gopalakrishnan S, Moreno-Mayar JV, Niemann J, Renaud G, Robson Brown KA, Bennett H, Pearson A, Helgason A, Gilbert MTP, Schroeder H. Sandoval-Velasco M, et al. Among authors: cruz davalos di. Am J Hum Genet. 2023 Oct 5;110(10):1825. doi: 10.1016/j.ajhg.2023.09.007. Am J Hum Genet. 2023. PMID: 37802045 Free PMC article. No abstract available.
Experimental conditions improving in-solution target enrichment for ancient DNA.
Cruz-Dávalos DI, Llamas B, Gaunitz C, Fages A, Gamba C, Soubrier J, Librado P, Seguin-Orlando A, Pruvost M, Alfarhan AH, Alquraishi SA, Al-Rasheid KAS, Scheu A, Beneke N, Ludwig A, Cooper A, Willerslev E, Orlando L. Cruz-Dávalos DI, et al. Mol Ecol Resour. 2017 May;17(3):508-522. doi: 10.1111/1755-0998.12595. Epub 2016 Sep 18. Mol Ecol Resour. 2017. PMID: 27566552