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A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS).
Nat Protoc. 2021 Nov;16(11):5030-5082. doi: 10.1038/s41596-021-00593-3. Epub 2021 Oct 11.
Nat Protoc. 2021.
PMID: 34635859
Free PMC article.
Review.
Growth instabilities shape morphology and genetic diversity of microbial colonies.
Golden A, Dukovski I, Segrè D, Korolev KS.
Golden A, et al. Among authors: dukovski i.
Phys Biol. 2022 Aug 19;19(5). doi: 10.1088/1478-3975/ac8514.
Phys Biol. 2022.
PMID: 35901792
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Metabolic resource allocation in individual microbes determines ecosystem interactions and spatial dynamics.
Harcombe WR, Riehl WJ, Dukovski I, Granger BR, Betts A, Lang AH, Bonilla G, Kar A, Leiby N, Mehta P, Marx CJ, Segrè D.
Harcombe WR, et al. Among authors: dukovski i.
Cell Rep. 2014 May 22;7(4):1104-15. doi: 10.1016/j.celrep.2014.03.070. Epub 2014 May 1.
Cell Rep. 2014.
PMID: 24794435
Free PMC article.
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Invaded cluster simulations of the XY model in two and three dimensions.
Dukovski I, Machta J, Chayes LV.
Dukovski I, et al.
Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Feb;65(2 Pt 2):026702. doi: 10.1103/PhysRevE.65.026702. Epub 2002 Jan 3.
Phys Rev E Stat Nonlin Soft Matter Phys. 2002.
PMID: 11863689
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