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Finding useful data across multiple biomedical data repositories using DataMed.
Ohno-Machado L, Sansone SA, Alter G, Fore I, Grethe J, Xu H, Gonzalez-Beltran A, Rocca-Serra P, Gururaj AE, Bell E, Soysal E, Zong N, Kim HE. Ohno-Machado L, et al. Among authors: gururaj ae. Nat Genet. 2017 May 26;49(6):816-819. doi: 10.1038/ng.3864. Nat Genet. 2017. PMID: 28546571 Free PMC article.
DATS, the data tag suite to enable discoverability of datasets.
Sansone SA, Gonzalez-Beltran A, Rocca-Serra P, Alter G, Grethe JS, Xu H, Fore IM, Lyle J, Gururaj AE, Chen X, Kim HE, Zong N, Li Y, Liu R, Ozyurt IB, Ohno-Machado L. Sansone SA, et al. Among authors: gururaj ae. Sci Data. 2017 Jun 6;4:170059. doi: 10.1038/sdata.2017.59. Sci Data. 2017. PMID: 28585923 Free PMC article.
DataMed - an open source discovery index for finding biomedical datasets.
Chen X, Gururaj AE, Ozyurt B, Liu R, Soysal E, Cohen T, Tiryaki F, Li Y, Zong N, Jiang M, Rogith D, Salimi M, Kim HE, Rocca-Serra P, Gonzalez-Beltran A, Farcas C, Johnson T, Margolis R, Alter G, Sansone SA, Fore IM, Ohno-Machado L, Grethe JS, Xu H. Chen X, et al. Among authors: gururaj ae. J Am Med Inform Assoc. 2018 Mar 1;25(3):300-308. doi: 10.1093/jamia/ocx121. J Am Med Inform Assoc. 2018. PMID: 29346583 Free PMC article.
Fostering global data sharing: highlighting the recommendations of the Research Data Alliance COVID-19 working group.
Austin CC, Bernier A, Bezuidenhout L, Bicarregui J, Biro T, Cambon-Thomsen A, Carroll SR, Cournia Z, Dabrowski PW, Diallo G, Duflot T, Garcia L, Gesing S, Gonzalez-Beltran A, Gururaj A, Harrower N, Lin D, Medeiros C, Méndez E, Meyers N, Mietchen D, Nagrani R, Nilsonne G, Parker S, Pickering B, Pienta A, Polydoratou P, Psomopoulos F, Rennes S, Rowe R, Sansone SA, Shanahan H, Sitz L, Stocks J, Tovani-Palone MR, Uhlmansiek M; Research Data Alliance. Austin CC, et al. Among authors: gururaj a. Wellcome Open Res. 2021 May 26;5:267. doi: 10.12688/wellcomeopenres.16378.2. eCollection 2020. Wellcome Open Res. 2021. PMID: 33501381 Free PMC article.
Ease of adoption of clinical natural language processing software: An evaluation of five systems.
Zheng K, Vydiswaran VGV, Liu Y, Wang Y, Stubbs A, Uzuner Ö, Gururaj AE, Bayer S, Aberdeen J, Rumshisky A, Pakhomov S, Liu H, Xu H. Zheng K, et al. Among authors: gururaj ae. J Biomed Inform. 2015 Dec;58 Suppl(Suppl):S189-S196. doi: 10.1016/j.jbi.2015.07.008. Epub 2015 Jul 22. J Biomed Inform. 2015. PMID: 26210361 Free PMC article.
We assessed how easy it is to adopt the submitted systems along the following three dimensions: communication effectiveness (i.e., how effective a system is in communicating its designed objectives to intended audience), effort required to install, and effort required to u …
We assessed how easy it is to adopt the submitted systems along the following three dimensions: communication effectiveness (i.e., ho …
Upstream determinants of estrogen receptor-alpha regulation of metastatic tumor antigen 3 pathway.
Mishra SK, Talukder AH, Gururaj AE, Yang Z, Singh RR, Mahoney MG, Francí C, Vadlamudi RK, Kumar R. Mishra SK, et al. Among authors: gururaj ae. J Biol Chem. 2004 Jul 30;279(31):32709-15. doi: 10.1074/jbc.M402942200. Epub 2004 May 28. J Biol Chem. 2004. PMID: 15169784 Free PMC article.
Genetic inactivation of MTA1 pathway promotes the ability of ER to up-regulate MTA3 expression, whereas knockdown of ER enhances MTA1 association with MTA3 gene. Modulation of ER functions, by corepressors (i.e. MTA1 and MTA1s) or coactivators (i.e. AIB1 and PELP1/M …
Genetic inactivation of MTA1 pathway promotes the ability of ER to up-regulate MTA3 expression, whereas knockdown of ER enhances MTA1 associ …
Access to the nucleus and functional association with c-Myc is required for the full oncogenic potential of ΔEGFR/EGFRvIII.
Gururaj AE, Gibson L, Panchabhai S, Bai M, Manyam G, Lu Y, Latha K, Rojas ML, Hwang Y, Liang S, Bogler O. Gururaj AE, et al. J Biol Chem. 2013 Feb 1;288(5):3428-38. doi: 10.1074/jbc.M112.399352. Epub 2012 Dec 17. J Biol Chem. 2013. PMID: 23250739 Free PMC article.
Nuclear actions of deltaEGFR include regulation of gene expression by participation in chromatin-bound complexes, and genome-wide mapping of these sequences by chromatin immunoprecipitation and massively parallel sequencing identified 2294 peaks. Bioinformatic analysis showed enr …
Nuclear actions of deltaEGFR include regulation of gene expression by participation in chromatin-bound complexes, and genome-wide mapping of …
Suppression of RAF/MEK or PI3K synergizes cytotoxicity of receptor tyrosine kinase inhibitors in glioma tumor-initiating cells.
Shingu T, Holmes L, Henry V, Wang Q, Latha K, Gururaj AE, Gibson LA, Doucette T, Lang FF, Rao G, Yuan L, Sulman EP, Farrell NP, Priebe W, Hess KR, Wang YA, Hu J, Bögler O. Shingu T, et al. Among authors: gururaj ae. J Transl Med. 2016 Feb 9;14:46. doi: 10.1186/s12967-016-0803-2. J Transl Med. 2016. PMID: 26861698 Free PMC article.