Firek BA[au] - Search Results

Year	Number of Results
2000	1
2003	1
2004	1
2005	1
2006	2
2008	1
2009	2
2014	1
2017	1
2018	2
2019	3
2020	1
2021	4
2023	3
2024	1

1

Maternal IgA protects against the development of necrotizing enterocolitis in preterm infants.

Gopalakrishna KP, Macadangdang BR, Rogers MB, Tometich JT, Firek BA, Baker R, Ji J, Burr AHP, Ma C, Good M, Morowitz MJ, Hand TW. Gopalakrishna KP, et al. Among authors: firek ba. Nat Med. 2019 Jul;25(7):1110-1115. doi: 10.1038/s41591-019-0480-9. Epub 2019 Jun 17. Nat Med. 2019. PMID: 31209335 Free PMC article.

2

Using strain-resolved analysis to identify contamination in metagenomics data.

Lou YC, Hoff J, Olm MR, West-Roberts J, Diamond S, Firek BA, Morowitz MJ, Banfield JF. Lou YC, et al. Among authors: firek ba. Microbiome. 2023 Mar 2;11(1):36. doi: 10.1186/s40168-023-01477-2. Microbiome. 2023. PMID: 36864482 Free PMC article.

3

Contamination source modeling with SCRuB improves cancer phenotype prediction from microbiome data.

Austin GI, Park H, Meydan Y, Seeram D, Sezin T, Lou YC, Firek BA, Morowitz MJ, Banfield JF, Christiano AM, Pe'er I, Uhlemann AC, Shenhav L, Korem T. Austin GI, et al. Among authors: firek ba. Nat Biotechnol. 2023 Dec;41(12):1820-1828. doi: 10.1038/s41587-023-01696-w. Epub 2023 Mar 16. Nat Biotechnol. 2023. PMID: 36928429

4

inStrain profiles population microdiversity from metagenomic data and sensitively detects shared microbial strains.

Olm MR, Crits-Christoph A, Bouma-Gregson K, Firek BA, Morowitz MJ, Banfield JF. Olm MR, et al. Among authors: firek ba. Nat Biotechnol. 2021 Jun;39(6):727-736. doi: 10.1038/s41587-020-00797-0. Epub 2021 Jan 18. Nat Biotechnol. 2021. PMID: 33462508 Free PMC article.

5

Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria.

Olm MR, Bhattacharya N, Crits-Christoph A, Firek BA, Baker R, Song YS, Morowitz MJ, Banfield JF. Olm MR, et al. Among authors: firek ba. Sci Adv. 2019 Dec 11;5(12):eaax5727. doi: 10.1126/sciadv.aax5727. eCollection 2019 Dec. Sci Adv. 2019. PMID: 31844663 Free PMC article.

6

Depletion of gut microbiota is associated with improved neurologic outcome following traumatic brain injury.

Simon DW, Rogers MB, Gao Y, Vincent G, Firek BA, Janesko-Feldman K, Vagni V, Kochanek PM, Ozolek JA, Mollen KP, Clark RSB, Morowitz MJ. Simon DW, et al. Among authors: firek ba. Brain Res. 2020 Nov 15;1747:147056. doi: 10.1016/j.brainres.2020.147056. Epub 2020 Aug 13. Brain Res. 2020. PMID: 32798452 Free PMC article.

7

Infant gut strain persistence is associated with maternal origin, phylogeny, and traits including surface adhesion and iron acquisition.

Lou YC, Olm MR, Diamond S, Crits-Christoph A, Firek BA, Baker R, Morowitz MJ, Banfield JF. Lou YC, et al. Among authors: firek ba. Cell Rep Med. 2021 Sep 7;2(9):100393. doi: 10.1016/j.xcrm.2021.100393. eCollection 2021 Sep 21. Cell Rep Med. 2021. PMID: 34622230 Free PMC article.

8

Infant gut DNA bacteriophage strain persistence during the first 3 years of life.

Lou YC, Chen L, Borges AL, West-Roberts J, Firek BA, Morowitz MJ, Banfield JF. Lou YC, et al. Among authors: firek ba. Cell Host Microbe. 2024 Jan 10;32(1):35-47.e6. doi: 10.1016/j.chom.2023.11.015. Epub 2023 Dec 13. Cell Host Microbe. 2024. PMID: 38096814 Free article.

9

Sustained Dysbiosis and Decreased Fecal Short-Chain Fatty Acids after Traumatic Brain Injury and Impact on Neurologic Outcome.

Opeyemi OM, Rogers MB, Firek BA, Janesko-Feldman K, Vagni V, Mullett SJ, Wendell SG, Nelson BP, New LA, Mariño E, Kochanek PM, Bayır H, Clark RSB, Morowitz MJ, Simon DW. Opeyemi OM, et al. Among authors: firek ba. J Neurotrauma. 2021 Sep 15;38(18):2610-2621. doi: 10.1089/neu.2020.7506. Epub 2021 Jun 7. J Neurotrauma. 2021. PMID: 33957773 Free PMC article.

10

Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms.

Olm MR, West PT, Brooks B, Firek BA, Baker R, Morowitz MJ, Banfield JF. Olm MR, et al. Among authors: firek ba. Microbiome. 2019 Feb 15;7(1):26. doi: 10.1186/s40168-019-0638-1. Microbiome. 2019. PMID: 30770768 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Results by year

Text availability

Article attribute

Article type

Publication date

23 results

Results by year

Search Page

Filters

My NCBI Filters

Results by year

Text availability

Article attribute

Article type

Publication date

Search Results

23 results

Results by year