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Page 1
A scalable SCENIC workflow for single-cell gene regulatory network analysis.
Nat Protoc. 2020 Jul;15(7):2247-2276. doi: 10.1038/s41596-020-0336-2. Epub 2020 Jun 19.
Nat Protoc. 2020.
PMID: 32561888
Systematic benchmarking of single-cell ATAC-sequencing protocols.
De Rop FV, Hulselmans G, Flerin C, Soler-Vila P, Rafels A, Christiaens V, González-Blas CB, Marchese D, Caratù G, Poovathingal S, Rozenblatt-Rosen O, Slyper M, Luo W, Muus C, Duarte F, Shrestha R, Bagdatli ST, Corces MR, Mamanova L, Knights A, Meyer KB, Mulqueen R, Taherinasab A, Maschmeyer P, Pezoldt J, Lambert CLG, Iglesias M, Najle SR, Dossani ZY, Martelotto LG, Burkett Z, Lebofsky R, Martin-Subero JI, Pillai S, Sebé-Pedrós A, Deplancke B, Teichmann SA, Ludwig LS, Braun TP, Adey AC, Greenleaf WJ, Buenrostro JD, Regev A, Aerts S, Heyn H.
De Rop FV, et al. Among authors: flerin c.
Nat Biotechnol. 2023 Aug 3. doi: 10.1038/s41587-023-01881-x. Online ahead of print.
Nat Biotechnol. 2023.
PMID: 37537502
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Interpretation of allele-specific chromatin accessibility using cell state-aware deep learning.
Atak ZK, Taskiran II, Demeulemeester J, Flerin C, Mauduit D, Minnoye L, Hulselmans G, Christiaens V, Ghanem GE, Wouters J, Aerts S.
Atak ZK, et al. Among authors: flerin c.
Genome Res. 2021 Jun;31(6):1082-1096. doi: 10.1101/gr.260851.120. Epub 2021 Apr 8.
Genome Res. 2021.
PMID: 33832990
Free PMC article.
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Hydrop enables droplet-based single-cell ATAC-seq and single-cell RNA-seq using dissolvable hydrogel beads.
De Rop FV, Ismail JN, Bravo González-Blas C, Hulselmans GJ, Flerin CC, Janssens J, Theunis K, Christiaens VM, Wouters J, Marcassa G, de Wit J, Poovathingal S, Aerts S.
De Rop FV, et al. Among authors: flerin cc.
Elife. 2022 Feb 23;11:e73971. doi: 10.7554/eLife.73971.
Elife. 2022.
PMID: 35195064
Free PMC article.
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