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Efficient ancestry and mutation simulation with msprime 1.0.
Baumdicker F, Bisschop G, Goldstein D, Gower G, Ragsdale AP, Tsambos G, Zhu S, Eldon B, Ellerman EC, Galloway JG, Gladstein AL, Gorjanc G, Guo B, Jeffery B, Kretzschumar WW, Lohse K, Matschiner M, Nelson D, Pope NS, Quinto-Cortés CD, Rodrigues MF, Saunack K, Sellinger T, Thornton K, van Kemenade H, Wohns AW, Wong Y, Gravel S, Kern AD, Koskela J, Ralph PL, Kelleher J. Baumdicker F, et al. Among authors: galloway jg. Genetics. 2022 Mar 3;220(3):iyab229. doi: 10.1093/genetics/iyab229. Genetics. 2022. PMID: 34897427 Free PMC article.
phippery: a software suite for PhIP-Seq data analysis.
Galloway JG, Sung K, Minot SS, Garrett ME, Stoddard CI, Willcox AC, Yaffe ZA, Yucha R, Overbaugh J, Matsen FA. Galloway JG, et al. Bioinformatics. 2023 Oct 3;39(10):btad583. doi: 10.1093/bioinformatics/btad583. Bioinformatics. 2023. PMID: 37740324 Free PMC article.
A community-maintained standard library of population genetic models.
Adrion JR, Cole CB, Dukler N, Galloway JG, Gladstein AL, Gower G, Kyriazis CC, Ragsdale AP, Tsambos G, Baumdicker F, Carlson J, Cartwright RA, Durvasula A, Gronau I, Kim BY, McKenzie P, Messer PW, Noskova E, Ortega-Del Vecchyo D, Racimo F, Struck TJ, Gravel S, Gutenkunst RN, Lohmueller KE, Ralph PL, Schrider DR, Siepel A, Kelleher J, Kern AD. Adrion JR, et al. Among authors: galloway jg. Elife. 2020 Jun 23;9:e54967. doi: 10.7554/eLife.54967. Elife. 2020. PMID: 32573438 Free PMC article.
Detailed analysis of antibody responses to SARS-CoV-2 vaccination and infection in macaques.
Willcox AC, Sung K, Garrett ME, Galloway JG, Erasmus JH, Logue JK, Hawman DW, Chu HY, Hasenkrug KJ, Fuller DH, Matsen Iv FA, Overbaugh J. Willcox AC, et al. Among authors: galloway jg. PLoS Pathog. 2022 Apr 11;18(4):e1010155. doi: 10.1371/journal.ppat.1010155. eCollection 2022 Apr. PLoS Pathog. 2022. PMID: 35404959 Free PMC article.
13 results