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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1970 1
1987 2
1988 2
1994 1
1995 6
1996 3
1997 2
1998 2
1999 1
2000 3
2001 1
2002 2
2003 1
2004 3
2005 4
2006 7
2007 5
2008 7
2009 2
2010 4
2011 5
2012 1
2013 3
2014 2
2015 4
2016 5
2017 4
2018 1
2019 7
2020 2
2021 3
2022 5
2023 3
2024 0

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100 results

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Page 1
Harmonizing semantic annotations for computational models in biology.
Neal ML, König M, Nickerson D, Mısırlı G, Kalbasi R, Dräger A, Atalag K, Chelliah V, Cooling MT, Cook DL, Crook S, de Alba M, Friedman SH, Garny A, Gennari JH, Gleeson P, Golebiewski M, Hucka M, Juty N, Myers C, Olivier BG, Sauro HM, Scharm M, Snoep JL, Touré V, Wipat A, Wolkenhauer O, Waltemath D. Neal ML, et al. Among authors: gennari jh. Brief Bioinform. 2019 Mar 22;20(2):540-550. doi: 10.1093/bib/bby087. Brief Bioinform. 2019. PMID: 30462164 Free PMC article. Review.
OMEX metadata specification (version 1.2).
Gennari JH, König M, Misirli G, Neal ML, Nickerson DP, Waltemath D. Gennari JH, et al. J Integr Bioinform. 2021 Oct 20;18(3):20210020. doi: 10.1515/jib-2021-0020. J Integr Bioinform. 2021. PMID: 34668356 Free PMC article.
Recommendations for evaluation and diagnosis of extra-glandular manifestations of primary Sjögren syndrome: results of an epidemiologic systematic review/meta-analysis and a consensus guideline from the Brazilian society of rheumatology (hepatic, gastrointestinal and pancreatic).
Trevisani VFM, Pinheiro AC, de Magalhães Souza Fialho SC, Fernandes MLMS, Pugliesi A, Pasoto SG, Lopes MLL, Guedes LKN, Miyamoto ST, Dos Santos LC, Appenzeller S, Fidelix T, Ribeiro SLE, de Brito DCSE, Libório-Kimura TN, Santos MCLFS, Cantali DU, Gennari JD', Capobianco KG, Civile VT, Pinto ACPN, da Rocha AP, Rocha-Filho CR, Oliveira FR, Valim V. Trevisani VFM, et al. Among authors: gennari jd. Adv Rheumatol. 2022 Oct 10;62(1):35. doi: 10.1186/s42358-022-00267-y. Adv Rheumatol. 2022. PMID: 36217186
Incorporating ideas from computer-supported cooperative work.
Pratt W, Reddy MC, McDonald DW, Tarczy-Hornoch P, Gennari JH. Pratt W, et al. Among authors: gennari jh. J Biomed Inform. 2004 Apr;37(2):128-37. doi: 10.1016/j.jbi.2004.04.001. J Biomed Inform. 2004. PMID: 15120659 Free article. Review.
Standard biological parts knowledgebase.
Galdzicki M, Rodriguez C, Chandran D, Sauro HM, Gennari JH. Galdzicki M, et al. Among authors: gennari jh. PLoS One. 2011 Feb 24;6(2):e17005. doi: 10.1371/journal.pone.0017005. PLoS One. 2011. PMID: 21390321 Free PMC article.
Synthetic Biology Open Language (SBOL) Version 2.2.0.
Cox RS, Madsen C, McLaughlin JA, Nguyen T, Roehner N, Bartley B, Beal J, Bissell M, Choi K, Clancy K, Grünberg R, Macklin C, Misirli G, Oberortner E, Pocock M, Samineni M, Zhang M, Zhang Z, Zundel Z, Gennari JH, Myers C, Sauro H, Wipat A. Cox RS, et al. Among authors: gennari jh. J Integr Bioinform. 2018 Apr 2;15(1):20180001. doi: 10.1515/jib-2018-0001. J Integr Bioinform. 2018. PMID: 29605823 Free PMC article.
An automated model annotation system (AMAS) for SBML models.
Shin W, Gennari JH, Hellerstein JL, Sauro HM. Shin W, et al. Among authors: gennari jh. Bioinformatics. 2023 Nov 1;39(11):btad658. doi: 10.1093/bioinformatics/btad658. Bioinformatics. 2023. PMID: 37882737 Free PMC article.
An Automated Model Annotation System (AMAS) for SBML Models.
Shin W, Gennari JH, Hellerstein JL, Sauro HM. Shin W, et al. Among authors: gennari jh. bioRxiv [Preprint]. 2023 Jul 21:2023.07.19.549722. doi: 10.1101/2023.07.19.549722. bioRxiv. 2023. PMID: 37503075 Free PMC article. Updated. Preprint.
BioSimulators: a central registry of simulation engines and services for recommending specific tools.
Shaikh B, Smith LP, Vasilescu D, Marupilla G, Wilson M, Agmon E, Agnew H, Andrews SS, Anwar A, Beber ME, Bergmann FT, Brooks D, Brusch L, Calzone L, Choi K, Cooper J, Detloff J, Drawert B, Dumontier M, Ermentrout GB, Faeder JR, Freiburger AP, Fröhlich F, Funahashi A, Garny A, Gennari JH, Gleeson P, Goelzer A, Haiman Z, Hasenauer J, Hellerstein JL, Hermjakob H, Hoops S, Ison JC, Jahn D, Jakubowski HV, Jordan R, Kalaš M, König M, Liebermeister W, Sheriff RSM, Mandal S, McDougal R, Medley JK, Mendes P, Müller R, Myers CJ, Naldi A, Nguyen TVN, Nickerson DP, Olivier BG, Patoliya D, Paulevé L, Petzold LR, Priya A, Rampadarath AK, Rohwer JM, Saglam AS, Singh D, Sinha A, Snoep J, Sorby H, Spangler R, Starruß J, Thomas PJ, van Niekerk D, Weindl D, Zhang F, Zhukova A, Goldberg AP, Schaff JC, Blinov ML, Sauro HM, Moraru II, Karr JR. Shaikh B, et al. Among authors: gennari jh. Nucleic Acids Res. 2022 Jul 5;50(W1):W108-W114. doi: 10.1093/nar/gkac331. Nucleic Acids Res. 2022. PMID: 35524558 Free PMC article.
100 results