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The thermodynamics of DNA loop formation, from J to Z.
Biochem Soc Trans. 2013 Apr;41(2):513-8. doi: 10.1042/BST20120324.
Biochem Soc Trans. 2013.
PMID: 23514145
Review.
Loop-closure kinetics reveal a stable, right-handed DNA intermediate in Cre recombination.
Shoura MJ, Giovan SM, Vetcher AA, Ziraldo R, Hanke A, Levene SD.
Shoura MJ, et al. Among authors: giovan sm.
Nucleic Acids Res. 2020 May 7;48(8):4371-4381. doi: 10.1093/nar/gkaa153.
Nucleic Acids Res. 2020.
PMID: 32182357
Free PMC article.
Item in Clipboard
Measurements of DNA-loop formation via Cre-mediated recombination.
Shoura MJ, Vetcher AA, Giovan SM, Bardai F, Bharadwaj A, Kesinger MR, Levene SD.
Shoura MJ, et al. Among authors: giovan sm.
Nucleic Acids Res. 2012 Aug;40(15):7452-64. doi: 10.1093/nar/gks430. Epub 2012 May 15.
Nucleic Acids Res. 2012.
PMID: 22589415
Free PMC article.
Item in Clipboard
DNA cyclization and looping in the wormlike limit: Normal modes and the validity of the harmonic approximation.
Giovan SM, Hanke A, Levene SD.
Giovan SM, et al.
Biopolymers. 2015 Sep;103(9):528-38. doi: 10.1002/bip.22683.
Biopolymers. 2015.
PMID: 26014845
Free PMC article.
Item in Clipboard
Free-energy calculations for semi-flexible macromolecules: applications to DNA knotting and looping.
Giovan SM, Scharein RG, Hanke A, Levene SD.
Giovan SM, et al.
J Chem Phys. 2014 Nov 7;141(17):174902. doi: 10.1063/1.4900657.
J Chem Phys. 2014.
PMID: 25381542
Free PMC article.
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