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2021 | 1 |
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Page 1
Generating functional protein variants with variational autoencoders.
PLoS Comput Biol. 2021 Feb 26;17(2):e1008736. doi: 10.1371/journal.pcbi.1008736. eCollection 2021 Feb.
PLoS Comput Biol. 2021.
PMID: 33635868
Free PMC article.
Getting personal with epigenetics: towards individual-specific epigenomic imputation with machine learning.
Hawkins-Hooker A, Visonà G, Narendra T, Rojas-Carulla M, Schölkopf B, Schweikert G.
Hawkins-Hooker A, et al.
Nat Commun. 2023 Aug 7;14(1):4750. doi: 10.1038/s41467-023-40211-2.
Nat Commun. 2023.
PMID: 37550323
Free PMC article.
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The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles.
Schreiber J, Boix C, Wook Lee J, Li H, Guan Y, Chang CC, Chang JC, Hawkins-Hooker A, Schölkopf B, Schweikert G, Carulla MR, Canakoglu A, Guzzo F, Nanni L, Masseroli M, Carman MJ, Pinoli P, Hong C, Yip KY, Spence JP, Batra SS, Song YS, Mahony S, Zhang Z, Tan W, Shen Y, Sun Y, Shi M, Adrian J, Sandstrom R, Farrell N, Halow J, Lee K, Jiang L, Yang X, Epstein C, Strattan JS, Bernstein B, Snyder M, Kellis M, Stafford W, Kundaje A; ENCODE Imputation Challenge Participants.
Schreiber J, et al. Among authors: hawkins hooker a.
Genome Biol. 2023 Apr 18;24(1):79. doi: 10.1186/s13059-023-02915-y.
Genome Biol. 2023.
PMID: 37072822
Free PMC article.
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Integration of multiple epigenomic marks improves prediction of variant impact in saturation mutagenesis reporter assay.
Shigaki D, Adato O, Adhikari AN, Dong S, Hawkins-Hooker A, Inoue F, Juven-Gershon T, Kenlay H, Martin B, Patra A, Penzar DD, Schubach M, Xiong C, Yan Z, Boyle AP, Kreimer A, Kulakovskiy IV, Reid J, Unger R, Yosef N, Shendure J, Ahituv N, Kircher M, Beer MA.
Shigaki D, et al. Among authors: hawkins hooker a.
Hum Mutat. 2019 Sep;40(9):1280-1291. doi: 10.1002/humu.23797. Epub 2019 Jun 23.
Hum Mutat. 2019.
PMID: 31106481
Free PMC article.
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