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The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data.
Reiff SB, Schroeder AJ, Kırlı K, Cosolo A, Bakker C, Mercado L, Lee S, Veit AD, Balashov AK, Vitzthum C, Ronchetti W, Pitman KM, Johnson J, Ehmsen SR, Kerpedjiev P, Abdennur N, Imakaev M, Öztürk SU, Çamoğlu U, Mirny LA, Gehlenborg N, Alver BH, Park PJ. Reiff SB, et al. Among authors: kirli k. Nat Commun. 2022 May 2;13(1):2365. doi: 10.1038/s41467-022-29697-4. Nat Commun. 2022. PMID: 35501320 Free PMC article.
Immuno-SABER enables highly multiplexed and amplified protein imaging in tissues.
Saka SK, Wang Y, Kishi JY, Zhu A, Zeng Y, Xie W, Kirli K, Yapp C, Cicconet M, Beliveau BJ, Lapan SW, Yin S, Lin M, Boyden ES, Kaeser PS, Pihan G, Church GM, Yin P. Saka SK, et al. Among authors: kirli k. Nat Biotechnol. 2019 Sep;37(9):1080-1090. doi: 10.1038/s41587-019-0207-y. Epub 2019 Aug 19. Nat Biotechnol. 2019. PMID: 31427819 Free PMC article.
Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications.
Rigano A, Ehmsen S, Öztürk SU, Ryan J, Balashov A, Hammer M, Kirli K, Boehm U, Brown CM, Bellve K, Chambers JJ, Cosolo A, Coleman RA, Faklaris O, Fogarty KE, Guilbert T, Hamacher AB, Itano MS, Keeley DP, Kunis S, Lacoste J, Laude A, Ma WY, Marcello M, Montero-Llopis P, Nelson G, Nitschke R, Pimentel JA, Weidtkamp-Peters S, Park PJ, Alver BH, Grunwald D, Strambio-De-Castillia C. Rigano A, et al. Among authors: kirli k. Nat Methods. 2021 Dec;18(12):1489-1495. doi: 10.1038/s41592-021-01315-z. Epub 2021 Dec 3. Nat Methods. 2021. PMID: 34862503 Free PMC article.
Author Correction: Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications.
Rigano A, Ehmsen S, Öztürk SU, Ryan J, Balashov A, Hammer M, Kirli K, Boehm U, Brown CM, Bellve K, Chambers JJ, Cosolo A, Coleman RA, Faklaris O, Fogarty KE, Guilbert T, Hamacher AB, Itano MS, Keeley DP, Kunis S, Lacoste J, Laude A, Ma WY, Marcello M, Montero-Llopis P, Nelson G, Nitschke R, Pimentel JA, Weidtkamp-Peters S, Park PJ, Alver BH, Grunwald D, Strambio-De-Castillia C. Rigano A, et al. Among authors: kirli k. Nat Methods. 2022 Feb;19(2):256. doi: 10.1038/s41592-021-01388-w. Nat Methods. 2022. PMID: 34952955 Free PMC article. No abstract available.
Author Correction: The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data.
Reiff SB, Schroeder AJ, Kırlı K, Cosolo A, Bakker C, Mercado L, Lee S, Veit AD, Balashov AK, Vitzthum C, Ronchetti W, Pitman KM, Johnson J, Ehmsen SR, Kerpedjiev P, Abdennur N, Imakaev M, Öztürk SU, Çamoğlu U, Mirny LA, Gehlenborg N, Alver BH, Park PJ. Reiff SB, et al. Among authors: kirli k. Nat Commun. 2022 Nov 2;13(1):6561. doi: 10.1038/s41467-022-34458-4. Nat Commun. 2022. PMID: 36323678 Free PMC article. No abstract available.
Precisely measured protein lifetimes in the mouse brain reveal differences across tissues and subcellular fractions.
Fornasiero EF, Mandad S, Wildhagen H, Alevra M, Rammner B, Keihani S, Opazo F, Urban I, Ischebeck T, Sakib MS, Fard MK, Kirli K, Centeno TP, Vidal RO, Rahman RU, Benito E, Fischer A, Dennerlein S, Rehling P, Feussner I, Bonn S, Simons M, Urlaub H, Rizzoli SO. Fornasiero EF, et al. Among authors: kirli k. Nat Commun. 2018 Oct 12;9(1):4230. doi: 10.1038/s41467-018-06519-0. Nat Commun. 2018. PMID: 30315172 Free PMC article.
The codon sequences predict protein lifetimes and other parameters of the protein life cycle in the mouse brain.
Mandad S, Rahman RU, Centeno TP, Vidal RO, Wildhagen H, Rammner B, Keihani S, Opazo F, Urban I, Ischebeck T, Kirli K, Benito E, Fischer A, Yousefi RY, Dennerlein S, Rehling P, Feussner I, Urlaub H, Bonn S, Rizzoli SO, Fornasiero EF. Mandad S, et al. Among authors: kirli k. Sci Rep. 2018 Nov 15;8(1):16913. doi: 10.1038/s41598-018-35277-8. Sci Rep. 2018. PMID: 30443017 Free PMC article.
11 results