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Page 1
A biochemically-interpretable machine learning classifier for microbial GWAS.
Nat Commun. 2020 May 22;11(1):2580. doi: 10.1038/s41467-020-16310-9.
Nat Commun. 2020.
PMID: 32444610
Free PMC article.
Adaptive laboratory evolution for improved tolerance of isobutyl acetate in Escherichia coli.
Matson MM, Cepeda MM, Zhang A, Case AE, Kavvas ES, Wang X, Carroll AL, Tagkopoulos I, Atsumi S.
Matson MM, et al. Among authors: kavvas es.
Metab Eng. 2022 Jan;69:50-58. doi: 10.1016/j.ymben.2021.11.002. Epub 2021 Nov 8.
Metab Eng. 2022.
PMID: 34763090
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Experimental Evolution Reveals Unifying Systems-Level Adaptations but Diversity in Driving Genotypes.
Kavvas ES, Long CP, Sastry A, Poudel S, Antoniewicz MR, Ding Y, Mohamed ET, Szubin R, Monk JM, Feist AM, Palsson BO.
Kavvas ES, et al.
mSystems. 2022 Dec 20;7(6):e0016522. doi: 10.1128/msystems.00165-22. Epub 2022 Oct 13.
mSystems. 2022.
PMID: 36226969
Free PMC article.
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Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance.
Kavvas ES, Catoiu E, Mih N, Yurkovich JT, Seif Y, Dillon N, Heckmann D, Anand A, Yang L, Nizet V, Monk JM, Palsson BO.
Kavvas ES, et al.
Nat Commun. 2018 Oct 17;9(1):4306. doi: 10.1038/s41467-018-06634-y.
Nat Commun. 2018.
PMID: 30333483
Free PMC article.
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Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens.
Hyun JC, Kavvas ES, Monk JM, Palsson BO.
Hyun JC, et al. Among authors: kavvas es.
PLoS Comput Biol. 2020 Mar 2;16(3):e1007608. doi: 10.1371/journal.pcbi.1007608. eCollection 2020 Mar.
PLoS Comput Biol. 2020.
PMID: 32119670
Free PMC article.
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Evaluation of rate law approximations in bottom-up kinetic models of metabolism.
Du B, Zielinski DC, Kavvas ES, Dräger A, Tan J, Zhang Z, Ruggiero KE, Arzumanyan GA, Palsson BO.
Du B, et al. Among authors: kavvas es.
BMC Syst Biol. 2016 Jun 6;10(1):40. doi: 10.1186/s12918-016-0283-2.
BMC Syst Biol. 2016.
PMID: 27266508
Free PMC article.
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Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions.
Kavvas ES, Seif Y, Yurkovich JT, Norsigian C, Poudel S, Greenwald WW, Ghatak S, Palsson BO, Monk JM.
Kavvas ES, et al.
BMC Syst Biol. 2018 Mar 2;12(1):25. doi: 10.1186/s12918-018-0557-y.
BMC Syst Biol. 2018.
PMID: 29499714
Free PMC article.
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