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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2011 1
2013 1
2014 3
2015 2
2016 1
2017 2
2018 5
2019 2
2020 3
2021 3
2022 7
2023 6
2024 2

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36 results

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Page 1
Technology dictates algorithms: recent developments in read alignment.
Alser M, Rotman J, Deshpande D, Taraszka K, Shi H, Baykal PI, Yang HT, Xue V, Knyazev S, Singer BD, Balliu B, Koslicki D, Skums P, Zelikovsky A, Alkan C, Mutlu O, Mangul S. Alser M, et al. Among authors: koslicki d. Genome Biol. 2021 Aug 26;22(1):249. doi: 10.1186/s13059-021-02443-7. Genome Biol. 2021. PMID: 34446078 Free PMC article. Review.
Critical Assessment of Metagenome Interpretation: the second round of challenges.
Meyer F, Fritz A, Deng ZL, Koslicki D, Lesker TR, Gurevich A, Robertson G, Alser M, Antipov D, Beghini F, Bertrand D, Brito JJ, Brown CT, Buchmann J, Buluç A, Chen B, Chikhi R, Clausen PTLC, Cristian A, Dabrowski PW, Darling AE, Egan R, Eskin E, Georganas E, Goltsman E, Gray MA, Hansen LH, Hofmeyr S, Huang P, Irber L, Jia H, Jørgensen TS, Kieser SD, Klemetsen T, Kola A, Kolmogorov M, Korobeynikov A, Kwan J, LaPierre N, Lemaitre C, Li C, Limasset A, Malcher-Miranda F, Mangul S, Marcelino VR, Marchet C, Marijon P, Meleshko D, Mende DR, Milanese A, Nagarajan N, Nissen J, Nurk S, Oliker L, Paoli L, Peterlongo P, Piro VC, Porter JS, Rasmussen S, Rees ER, Reinert K, Renard B, Robertsen EM, Rosen GL, Ruscheweyh HJ, Sarwal V, Segata N, Seiler E, Shi L, Sun F, Sunagawa S, Sørensen SJ, Thomas A, Tong C, Trajkovski M, Tremblay J, Uritskiy G, Vicedomini R, Wang Z, Wang Z, Wang Z, Warren A, Willassen NP, Yelick K, You R, Zeller G, Zhao Z, Zhu S, Zhu J, Garrido-Oter R, Gastmeier P, Hacquard S, Häußler S, Khaledi A, Maechler F, Mesny F, Radutoiu S, Schulze-Lefert P, Smit N, Strowig T, Bremges A, Sczyrba A, McHardy AC. Meyer F, et al. Among authors: koslicki d. Nat Methods. 2022 Apr;19(4):429-440. doi: 10.1038/s41592-022-01431-4. Epub 2022 Apr 8. Nat Methods. 2022. PMID: 35396482 Free PMC article.
Topological entropy of DNA sequences.
Koslicki D. Koslicki D. Bioinformatics. 2011 Apr 15;27(8):1061-7. doi: 10.1093/bioinformatics/btr077. Epub 2011 Feb 10. Bioinformatics. 2011. PMID: 21317142
Assessing taxonomic metagenome profilers with OPAL.
Meyer F, Bremges A, Belmann P, Janssen S, McHardy AC, Koslicki D. Meyer F, et al. Among authors: koslicki d. Genome Biol. 2019 Mar 4;20(1):51. doi: 10.1186/s13059-019-1646-y. Genome Biol. 2019. PMID: 30832730 Free PMC article.
The minimizer Jaccard estimator is biased and inconsistent.
Belbasi M, Blanca A, Harris RS, Koslicki D, Medvedev P. Belbasi M, et al. Among authors: koslicki d. Bioinformatics. 2022 Jun 24;38(Suppl 1):i169-i176. doi: 10.1093/bioinformatics/btac244. Bioinformatics. 2022. PMID: 35758786 Free PMC article.
ARAX: a graph-based modular reasoning tool for translational biomedicine.
Glen AK, Ma C, Mendoza L, Womack F, Wood EC, Sinha M, Acevedo L, Kvarfordt LG, Peene RC, Liu S, Hoffman AS, Roach JC, Deutsch EW, Ramsey SA, Koslicki D. Glen AK, et al. Among authors: koslicki d. Bioinformatics. 2023 Mar 1;39(3):btad082. doi: 10.1093/bioinformatics/btad082. Bioinformatics. 2023. PMID: 36752514 Free PMC article.
Striped UniFrac: enabling microbiome analysis at unprecedented scale.
McDonald D, Vázquez-Baeza Y, Koslicki D, McClelland J, Reeve N, Xu Z, Gonzalez A, Knight R. McDonald D, et al. Among authors: koslicki d. Nat Methods. 2018 Nov;15(11):847-848. doi: 10.1038/s41592-018-0187-8. Nat Methods. 2018. PMID: 30377368 Free PMC article. No abstract available.
36 results