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Year Number of Results
2010 1
2011 1
2012 1
2013 2
2014 3
2015 4
2016 4
2017 3
2018 8
2019 5
2020 5
2021 11
2022 7
2023 7
2024 2

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57 results

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Page 1
WikiPathways: connecting communities.
Martens M, Ammar A, Riutta A, Waagmeester A, Slenter DN, Hanspers K, A Miller R, Digles D, Lopes EN, Ehrhart F, Dupuis LJ, Winckers LA, Coort SL, Willighagen EL, Evelo CT, Pico AR, Kutmon M. Martens M, et al. Among authors: kutmon m. Nucleic Acids Res. 2021 Jan 8;49(D1):D613-D621. doi: 10.1093/nar/gkaa1024. Nucleic Acids Res. 2021. PMID: 33211851 Free PMC article.
Guiding the choice of informatics software and tools for lipidomics research applications.
Ni Z, Wölk M, Jukes G, Mendivelso Espinosa K, Ahrends R, Aimo L, Alvarez-Jarreta J, Andrews S, Andrews R, Bridge A, Clair GC, Conroy MJ, Fahy E, Gaud C, Goracci L, Hartler J, Hoffmann N, Kopczyinki D, Korf A, Lopez-Clavijo AF, Malik A, Ackerman JM, Molenaar MR, O'Donovan C, Pluskal T, Shevchenko A, Slenter D, Siuzdak G, Kutmon M, Tsugawa H, Willighagen EL, Xia J, O'Donnell VB, Fedorova M. Ni Z, et al. Among authors: kutmon m. Nat Methods. 2023 Feb;20(2):193-204. doi: 10.1038/s41592-022-01710-0. Epub 2022 Dec 21. Nat Methods. 2023. PMID: 36543939 Free PMC article. Review.
Research Techniques Made Simple: Lipidomic Analysis in Skin Research.
Sochorová M, Vávrová K, Fedorova M, Ni Z, Slenter D, Kutmon M, Willighagen EL, Letsiou S, Töröcsik D, Marchetti-Deschmann M, Zoratto S, Kremslehner C, Gruber F. Sochorová M, et al. Among authors: kutmon m. J Invest Dermatol. 2022 Jan;142(1):4-11.e1. doi: 10.1016/j.jid.2021.09.017. J Invest Dermatol. 2022. PMID: 34924150 Free article. Review.
WikiPathways 2024: next generation pathway database.
Agrawal A, Balcı H, Hanspers K, Coort SL, Martens M, Slenter DN, Ehrhart F, Digles D, Waagmeester A, Wassink I, Abbassi-Daloii T, Lopes EN, Iyer A, Acosta JM, Willighagen LG, Nishida K, Riutta A, Basaric H, Evelo CT, Willighagen EL, Kutmon M, Pico AR. Agrawal A, et al. Among authors: kutmon m. Nucleic Acids Res. 2024 Jan 5;52(D1):D679-D689. doi: 10.1093/nar/gkad960. Nucleic Acids Res. 2024. PMID: 37941138 Free PMC article.
Ten simple rules for creating reusable pathway models for computational analysis and visualization.
Hanspers K, Kutmon M, Coort SL, Digles D, Dupuis LJ, Ehrhart F, Hu F, Lopes EN, Martens M, Pham N, Shin W, Slenter DN, Waagmeester A, Willighagen EL, Winckers LA, Evelo CT, Pico AR. Hanspers K, et al. Among authors: kutmon m. PLoS Comput Biol. 2021 Aug 19;17(8):e1009226. doi: 10.1371/journal.pcbi.1009226. eCollection 2021 Aug. PLoS Comput Biol. 2021. PMID: 34411100 Free PMC article. No abstract available.
A bioinformatics workflow to decipher transcriptomic data from vitamin D studies.
Muñoz García A, Eijssen LM, Kutmon M, Sarathy C, Cengo A, Hewison M, Evelo CT, Lenz M, Coort SL. Muñoz García A, et al. Among authors: kutmon m. J Steroid Biochem Mol Biol. 2019 May;189:28-35. doi: 10.1016/j.jsbmb.2019.01.003. Epub 2019 Feb 1. J Steroid Biochem Mol Biol. 2019. PMID: 30716464 Free article. Review.
Systems Biology in ELIXIR: modelling in the spotlight.
Martins Dos Santos V, Anton M, Szomolay B, Ostaszewski M, Arts I, Benfeitas R, Dominguez Del Angel V, Ferk P, Fey D, Goble C, Golebiewski M, Gruden K, Heil KF, Hermjakob H, Kahlem P, Klapa MI, Koehorst J, Kolodkin A, Kutmon M, Leskošek B, Moretti S, Müller W, Pagni M, Rezen T, Rocha M, Rozman D, Šafránek D, Sheriff RSM, Suarez Diez M, Van Steen K, Westerhoff HV, Wittig U, Wolstencroft K, Zupanic A, Evelo CT, Hancock JM. Martins Dos Santos V, et al. Among authors: kutmon m. F1000Res. 2022 Nov 7;11:ELIXIR-1265. doi: 10.12688/f1000research.126734.1. eCollection 2022. F1000Res. 2022. PMID: 36742342 Free PMC article.
The systems biology format converter.
Rodriguez N, Pettit JB, Dalle Pezze P, Li L, Henry A, van Iersel MP, Jalowicki G, Kutmon M, Natarajan KN, Tolnay D, Stefan MI, Evelo CT, Le Novère N. Rodriguez N, et al. Among authors: kutmon m. BMC Bioinformatics. 2016 Apr 5;17:154. doi: 10.1186/s12859-016-1000-2. BMC Bioinformatics. 2016. PMID: 27044654 Free PMC article.
Reactome from a WikiPathways Perspective.
Bohler A, Wu G, Kutmon M, Pradhana LA, Coort SL, Hanspers K, Haw R, Pico AR, Evelo CT. Bohler A, et al. Among authors: kutmon m. PLoS Comput Biol. 2016 May 20;12(5):e1004941. doi: 10.1371/journal.pcbi.1004941. eCollection 2016 May. PLoS Comput Biol. 2016. PMID: 27203685 Free PMC article.
57 results