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Deciphering multi-way interactions in the human genome.
Dotson GA, Chen C, Lindsly S, Cicalo A, Dilworth S, Ryan C, Jeyarajan S, Meixner W, Stansbury C, Pickard J, Beckloff N, Surana A, Wicha M, Muir LA, Rajapakse I. Dotson GA, et al. Among authors: lindsly s. Nat Commun. 2022 Sep 20;13(1):5498. doi: 10.1038/s41467-022-32980-z. Nat Commun. 2022. PMID: 36127324 Free PMC article.
Algorithm for cellular reprogramming.
Ronquist S, Patterson G, Muir LA, Lindsly S, Chen H, Brown M, Wicha MS, Bloch A, Brockett R, Rajapakse I. Ronquist S, et al. Among authors: lindsly s. Proc Natl Acad Sci U S A. 2017 Nov 7;114(45):11832-11837. doi: 10.1073/pnas.1712350114. Epub 2017 Oct 24. Proc Natl Acad Sci U S A. 2017. PMID: 29078370 Free PMC article.
4DNvestigator: time series genomic data analysis toolbox.
Lindsly S, Chen C, Liu S, Ronquist S, Dilworth S, Perlman M, Rajapakse I. Lindsly S, et al. Nucleus. 2021 Dec;12(1):58-64. doi: 10.1080/19491034.2021.1910437. Nucleus. 2021. PMID: 33794739 Free PMC article.
Understanding memory B cell selection.
Lindsly S, Gupta M, Stansbury C, Rajapakse I. Lindsly S, et al. J Theor Biol. 2021 Dec 21;531:110905. doi: 10.1016/j.jtbi.2021.110905. Epub 2021 Sep 17. J Theor Biol. 2021. PMID: 34543633 Free article.
Functional organization of the maternal and paternal human 4D Nucleome.
Lindsly S, Jia W, Chen H, Liu S, Ronquist S, Chen C, Wen X, Stansbury C, Dotson GA, Ryan C, Rehemtulla A, Omenn GS, Wicha M, Li SC, Muir L, Rajapakse I. Lindsly S, et al. iScience. 2021 Nov 16;24(12):103452. doi: 10.1016/j.isci.2021.103452. eCollection 2021 Dec 17. iScience. 2021. PMID: 34877507 Free PMC article.