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2015 1
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2018 1
2019 1
2022 2
2023 2
2024 0

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Page 1
Genome-wide genetic heterogeneity discovery with categorical covariates.
Llinares-López F, Papaxanthos L, Bodenham D, Roqueiro D; COPDGene Investigators; Borgwardt K. Llinares-López F, et al. Bioinformatics. 2017 Jun 15;33(12):1820-1828. doi: 10.1093/bioinformatics/btx071. Bioinformatics. 2017. PMID: 28200033 Free PMC article.
Deep embedding and alignment of protein sequences.
Llinares-López F, Berthet Q, Blondel M, Teboul O, Vert JP. Llinares-López F, et al. Nat Methods. 2023 Jan;20(1):104-111. doi: 10.1038/s41592-022-01700-2. Epub 2022 Dec 15. Nat Methods. 2023. PMID: 36522501
graphkernels: R and Python packages for graph comparison.
Sugiyama M, Ghisu ME, Llinares-López F, Borgwardt K. Sugiyama M, et al. Among authors: llinares lopez f. Bioinformatics. 2018 Feb 1;34(3):530-532. doi: 10.1093/bioinformatics/btx602. Bioinformatics. 2018. PMID: 29028902 Free PMC article.
DeepConsensus improves the accuracy of sequences with a gap-aware sequence transformer.
Baid G, Cook DE, Shafin K, Yun T, Llinares-López F, Berthet Q, Belyaeva A, Töpfer A, Wenger AM, Rowell WJ, Yang H, Kolesnikov A, Ammar W, Vert JP, Vaswani A, McLean CY, Nattestad M, Chang PC, Carroll A. Baid G, et al. Among authors: llinares lopez f. Nat Biotechnol. 2023 Feb;41(2):232-238. doi: 10.1038/s41587-022-01435-7. Epub 2022 Sep 1. Nat Biotechnol. 2023. PMID: 36050551