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2018 | 1 |
2020 | 5 |
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Page 1
The impact of sex on gene expression across human tissues.
Science. 2020 Sep 11;369(6509):eaba3066. doi: 10.1126/science.aba3066.
Science. 2020.
PMID: 32913072
Free PMC article.
PyHIST: A Histological Image Segmentation Tool.
Muñoz-Aguirre M, Ntasis VF, Rojas S, Guigó R.
Muñoz-Aguirre M, et al.
PLoS Comput Biol. 2020 Oct 19;16(10):e1008349. doi: 10.1371/journal.pcbi.1008349. eCollection 2020 Oct.
PLoS Comput Biol. 2020.
PMID: 33075075
Free PMC article.
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Cell type-specific genetic regulation of gene expression across human tissues.
Kim-Hellmuth S, Aguet F, Oliva M, Muñoz-Aguirre M, Kasela S, Wucher V, Castel SE, Hamel AR, Viñuela A, Roberts AL, Mangul S, Wen X, Wang G, Barbeira AN, Garrido-Martín D, Nadel BB, Zou Y, Bonazzola R, Quan J, Brown A, Martinez-Perez A, Soria JM; GTEx Consortium; Getz G, Dermitzakis ET, Small KS, Stephens M, Xi HS, Im HK, Guigó R, Segrè AV, Stranger BE, Ardlie KG, Lappalainen T.
Kim-Hellmuth S, et al. Among authors: munoz aguirre m.
Science. 2020 Sep 11;369(6509):eaaz8528. doi: 10.1126/science.aaz8528.
Science. 2020.
PMID: 32913075
Free PMC article.
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Brain transcriptomic profiling reveals common alterations across neurodegenerative and psychiatric disorders.
Sadeghi I, Gispert JD, Palumbo E, Muñoz-Aguirre M, Wucher V, D'Argenio V, Santpere G, Navarro A, Guigo R, Vilor-Tejedor N.
Sadeghi I, et al. Among authors: munoz aguirre m.
Comput Struct Biotechnol J. 2022 Aug 19;20:4549-4561. doi: 10.1016/j.csbj.2022.08.037. eCollection 2022.
Comput Struct Biotechnol J. 2022.
PMID: 36090817
Free PMC article.
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Functional annotation of human long noncoding RNAs via molecular phenotyping.
Ramilowski JA, Yip CW, Agrawal S, Chang JC, Ciani Y, Kulakovskiy IV, Mendez M, Ooi JLC, Ouyang JF, Parkinson N, Petri A, Roos L, Severin J, Yasuzawa K, Abugessaisa I, Akalin A, Antonov IV, Arner E, Bonetti A, Bono H, Borsari B, Brombacher F, Cameron CJ, Cannistraci CV, Cardenas R, Cardon M, Chang H, Dostie J, Ducoli L, Favorov A, Fort A, Garrido D, Gil N, Gimenez J, Guler R, Handoko L, Harshbarger J, Hasegawa A, Hasegawa Y, Hashimoto K, Hayatsu N, Heutink P, Hirose T, Imada EL, Itoh M, Kaczkowski B, Kanhere A, Kawabata E, Kawaji H, Kawashima T, Kelly ST, Kojima M, Kondo N, Koseki H, Kouno T, Kratz A, Kurowska-Stolarska M, Kwon ATJ, Leek J, Lennartsson A, Lizio M, López-Redondo F, Luginbühl J, Maeda S, Makeev VJ, Marchionni L, Medvedeva YA, Minoda A, Müller F, Muñoz-Aguirre M, Murata M, Nishiyori H, Nitta KR, Noguchi S, Noro Y, Nurtdinov R, Okazaki Y, Orlando V, Paquette D, Parr CJC, Rackham OJL, Rizzu P, Sánchez Martinez DF, Sandelin A, Sanjana P, Semple CAM, Shibayama Y, Sivaraman DM, Suzuki T, Szumowski SC, Tagami M, Taylor MS, Terao C, Thodberg M, Thongjuea S, Tripathi V, Ulitsky I, Verardo R, Vorontsov IE, Yamamoto C, Young RS, Baillie JK, Forrest ARR, Guigó R, Hoffman …
See abstract for full author list ➔
Ramilowski JA, et al. Among authors: munoz aguirre m.
Genome Res. 2020 Jul;30(7):1060-1072. doi: 10.1101/gr.254219.119. Epub 2020 Jul 27.
Genome Res. 2020.
PMID: 32718982
Free PMC article.
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A limited set of transcriptional programs define major cell types.
Breschi A, Muñoz-Aguirre M, Wucher V, Davis CA, Garrido-Martín D, Djebali S, Gillis J, Pervouchine DD, Vlasova A, Dobin A, Zaleski C, Drenkow J, Danyko C, Scavelli A, Reverter F, Snyder MP, Gingeras TR, Guigó R.
Breschi A, et al. Among authors: munoz aguirre m.
Genome Res. 2020 Jul;30(7):1047-1059. doi: 10.1101/gr.263186.120. Epub 2020 Jul 29.
Genome Res. 2020.
PMID: 32759341
Free PMC article.
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The effects of death and post-mortem cold ischemia on human tissue transcriptomes.
Ferreira PG, Muñoz-Aguirre M, Reverter F, Sá Godinho CP, Sousa A, Amadoz A, Sodaei R, Hidalgo MR, Pervouchine D, Carbonell-Caballero J, Nurtdinov R, Breschi A, Amador R, Oliveira P, Çubuk C, Curado J, Aguet F, Oliveira C, Dopazo J, Sammeth M, Ardlie KG, Guigó R.
Ferreira PG, et al. Among authors: munoz aguirre m.
Nat Commun. 2018 Feb 13;9(1):490. doi: 10.1038/s41467-017-02772-x.
Nat Commun. 2018.
PMID: 29440659
Free PMC article.
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