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GTDB-Tk v2: memory friendly classification with the genome taxonomy database.
Bioinformatics. 2022 Nov 30;38(23):5315-5316. doi: 10.1093/bioinformatics/btac672.
Bioinformatics. 2022.
PMID: 36218463
Free PMC article.
A complete domain-to-species taxonomy for Bacteria and Archaea.
Parks DH, Chuvochina M, Chaumeil PA, Rinke C, Mussig AJ, Hugenholtz P.
Parks DH, et al. Among authors: mussig aj.
Nat Biotechnol. 2020 Sep;38(9):1079-1086. doi: 10.1038/s41587-020-0501-8. Epub 2020 Apr 27.
Nat Biotechnol. 2020.
PMID: 32341564
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A standardized archaeal taxonomy for the Genome Taxonomy Database.
Rinke C, Chuvochina M, Mussig AJ, Chaumeil PA, Davín AA, Waite DW, Whitman WB, Parks DH, Hugenholtz P.
Rinke C, et al. Among authors: mussig aj.
Nat Microbiol. 2021 Jul;6(7):946-959. doi: 10.1038/s41564-021-00918-8. Epub 2021 Jun 21.
Nat Microbiol. 2021.
PMID: 34155373
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Proposal of names for 329 higher rank taxa defined in the Genome Taxonomy Database under two prokaryotic codes.
Chuvochina M, Mussig AJ, Chaumeil PA, Skarshewski A, Rinke C, Parks DH, Hugenholtz P.
Chuvochina M, et al. Among authors: mussig aj.
FEMS Microbiol Lett. 2023 Jan 17;370:fnad071. doi: 10.1093/femsle/fnad071.
FEMS Microbiol Lett. 2023.
PMID: 37480240
Free PMC article.
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GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy.
Parks DH, Chuvochina M, Rinke C, Mussig AJ, Chaumeil PA, Hugenholtz P.
Parks DH, et al. Among authors: mussig aj.
Nucleic Acids Res. 2022 Jan 7;50(D1):D785-D794. doi: 10.1093/nar/gkab776.
Nucleic Acids Res. 2022.
PMID: 34520557
Free PMC article.
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GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database.
Chaumeil PA, Mussig AJ, Hugenholtz P, Parks DH.
Chaumeil PA, et al. Among authors: mussig aj.
Bioinformatics. 2019 Nov 15;36(6):1925-7. doi: 10.1093/bioinformatics/btz848. Online ahead of print.
Bioinformatics. 2019.
PMID: 31730192
Free PMC article.
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Author Correction: A complete domain-to-species taxonomy for Bacteria and Archaea.
Parks DH, Chuvochina M, Chaumeil PA, Rinke C, Mussig AJ, Hugenholtz P.
Parks DH, et al. Among authors: mussig aj.
Nat Biotechnol. 2020 Sep;38(9):1098. doi: 10.1038/s41587-020-0539-7.
Nat Biotechnol. 2020.
PMID: 32887961
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