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DAMEfinder: a method to detect differential allele-specific methylation.
Epigenetics Chromatin. 2020 Jun 1;13(1):25. doi: 10.1186/s13072-020-00346-8.
Epigenetics Chromatin. 2020.
PMID: 32487212
Free PMC article.
Disentangling tumorigenesis-associated DNA methylation changes in colorectal tissues from those associated with ageing.
Orjuela S, Parker HR, Sajibu S, Cereatti F, Sauter M, Buffoli F, Robinson MD, Marra G.
Orjuela S, et al.
Epigenetics. 2022 Jun;17(6):677-694. doi: 10.1080/15592294.2021.1952375. Epub 2021 Aug 9.
Epigenetics. 2022.
PMID: 34369258
Free PMC article.
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The proto CpG island methylator phenotype of sessile serrated adenomas/polyps.
Parker HR, Orjuela S, Martinho Oliveira A, Cereatti F, Sauter M, Heinrich H, Tanzi G, Weber A, Komminoth P, Vavricka S, Albanese L, Buffoli F, Robinson MD, Marra G.
Parker HR, et al. Among authors: orjuela s.
Epigenetics. 2018;13(10-11):1088-1105. doi: 10.1080/15592294.2018.1543504. Epub 2018 Nov 22.
Epigenetics. 2018.
PMID: 30398409
Free PMC article.
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ARMOR: An Automated Reproducible MOdular Workflow for Preprocessing and Differential Analysis of RNA-seq Data.
Orjuela S, Huang R, Hembach KM, Robinson MD, Soneson C.
Orjuela S, et al.
G3 (Bethesda). 2019 Jul 9;9(7):2089-2096. doi: 10.1534/g3.119.400185. Print 2019 Jul 1.
G3 (Bethesda). 2019.
PMID: 31088905
Free PMC article.
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Validation of hypermethylated DNA regions found in colorectal cancers as potential aging-independent biomarkers of precancerous colorectal lesions.
Sajibu S, Sonder E, Tiwari A, Orjuela S, Parker HR, Frans OT, Gubler C, Marra G, Robinson MD.
Sajibu S, et al. Among authors: orjuela s.
BMC Cancer. 2023 Oct 18;23(1):998. doi: 10.1186/s12885-023-11487-w.
BMC Cancer. 2023.
PMID: 37853362
Free PMC article.
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The DNA hypermethylation phenotype of colorectal cancer liver metastases resembles that of the primary colorectal cancers.
Orjuela S, Menigatti M, Schraml P, Kambakamba P, Robinson MD, Marra G.
Orjuela S, et al.
BMC Cancer. 2020 Apr 6;20(1):290. doi: 10.1186/s12885-020-06777-6.
BMC Cancer. 2020.
PMID: 32252665
Free PMC article.
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