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2022 1
2023 5
2024 2

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Page 1
On weighted k-mer dictionaries.
Pibiri GE. Pibiri GE. Algorithms Mol Biol. 2023 Jun 17;18(1):3. doi: 10.1186/s13015-023-00226-2. Algorithms Mol Biol. 2023. PMID: 37328897 Free PMC article.
Sparse and skew hashing of K-mers.
Pibiri GE. Pibiri GE. Bioinformatics. 2022 Jun 24;38(Suppl 1):i185-i194. doi: 10.1093/bioinformatics/btac245. Bioinformatics. 2022. PMID: 35758794 Free PMC article.
Meta-colored compacted de Bruijn graphs.
Pibiri GE, Fan J, Patro R. Pibiri GE, et al. bioRxiv [Preprint]. 2023 Nov 1:2023.07.21.550101. doi: 10.1101/2023.07.21.550101. bioRxiv. 2023. PMID: 37546988 Free PMC article. Preprint.
Locality-preserving minimal perfect hashing of k-mers.
Pibiri GE, Shibuya Y, Limasset A. Pibiri GE, et al. Bioinformatics. 2023 Jun 30;39(Suppl 1):i534-i543. doi: 10.1093/bioinformatics/btad219. Bioinformatics. 2023. PMID: 37387137 Free PMC article.
Matchtigs: minimum plain text representation of k-mer sets.
Schmidt S, Khan S, Alanko JN, Pibiri GE, Tomescu AI. Schmidt S, et al. Among authors: pibiri ge. Genome Biol. 2023 Jun 9;24(1):136. doi: 10.1186/s13059-023-02968-z. Genome Biol. 2023. PMID: 37296461 Free PMC article.
Designing efficient randstrobes for sequence similarity analyses.
Karami M, Soltani Mohammadi A, Martin M, Ekim B, Shen W, Guo L, Xu M, Pibiri GE, Patro R, Sahlin K. Karami M, et al. Among authors: pibiri ge. Bioinformatics. 2024 Mar 29;40(4):btae187. doi: 10.1093/bioinformatics/btae187. Bioinformatics. 2024. PMID: 38579261 Free PMC article.