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Ximmer: a system for improving accuracy and consistency of CNV calling from exome data.
Gigascience. 2018 Oct 1;7(10):giy112. doi: 10.1093/gigascience/giy112.
Gigascience. 2018.
PMID: 30192941
Free PMC article.
Cpipe: a shared variant detection pipeline designed for diagnostic settings.
Sadedin SP, Dashnow H, James PA, Bahlo M, Bauer DC, Lonie A, Lunke S, Macciocca I, Ross JP, Siemering KR, Stark Z, White SM; Melbourne Genomics Health Alliance; Taylor G, Gaff C, Oshlack A, Thorne NP.
Sadedin SP, et al.
Genome Med. 2015 Jul 10;7(1):68. doi: 10.1186/s13073-015-0191-x. eCollection 2015.
Genome Med. 2015.
PMID: 26217397
Free PMC article.
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Bpipe: a tool for running and managing bioinformatics pipelines.
Sadedin SP, Pope B, Oshlack A.
Sadedin SP, et al.
Bioinformatics. 2012 Jun 1;28(11):1525-6. doi: 10.1093/bioinformatics/bts167. Epub 2012 Apr 12.
Bioinformatics. 2012.
PMID: 22500002
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Bazam: a rapid method for read extraction and realignment of high-throughput sequencing data.
Sadedin SP, Oshlack A.
Sadedin SP, et al.
Genome Biol. 2019 Apr 18;20(1):78. doi: 10.1186/s13059-019-1688-1.
Genome Biol. 2019.
PMID: 30999943
Free PMC article.
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