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2019 2
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A molecular glue approach to control the half-life of CRISPR-based technologies.
Sreekanth V, Jan M, Zhao KT, Lim D, Davis JR, McConkey M, Kovalcik V, Barkal S, Law BK, Fife J, Tian R, Vinyard ME, Becerra B, Kampmann M, Sherwood RI, Pinello L, Liu DR, Ebert BL, Choudhary A. Sreekanth V, et al. Among authors: vinyard me. bioRxiv [Preprint]. 2023 Mar 20:2023.03.12.531757. doi: 10.1101/2023.03.12.531757. bioRxiv. 2023. PMID: 36945568 Free PMC article. Preprint.
Integrative dissection of gene regulatory elements at base resolution.
Chen Z, Javed N, Moore M, Wu J, Sun G, Vinyard M, Collins A, Pinello L, Najm FJ, Bernstein BE. Chen Z, et al. Among authors: vinyard m. Cell Genom. 2023 Apr 28;3(6):100318. doi: 10.1016/j.xgen.2023.100318. eCollection 2023 Jun 14. Cell Genom. 2023. PMID: 37388913 Free PMC article.
SIMBA: single-cell embedding along with features.
Chen H, Ryu J, Vinyard ME, Lerer A, Pinello L. Chen H, et al. Among authors: vinyard me. Nat Methods. 2023 May 29. doi: 10.1038/s41592-023-01899-8. Online ahead of print. Nat Methods. 2023. PMID: 37248389
CRISPR-suppressor scanning reveals a nonenzymatic role of LSD1 in AML.
Vinyard ME, Su C, Siegenfeld AP, Waterbury AL, Freedy AM, Gosavi PM, Park Y, Kwan EE, Senzer BD, Doench JG, Bauer DE, Pinello L, Liau BB. Vinyard ME, et al. Nat Chem Biol. 2019 May;15(5):529-539. doi: 10.1038/s41589-019-0263-0. Epub 2019 Apr 15. Nat Chem Biol. 2019. PMID: 30992567 Free PMC article.
Defining and benchmarking open problems in single-cell analysis.
Luecken M, Gigante S, Burkhardt D, Cannoodt R, Strobl D, Markov N, Zappia L, Palla G, Lewis W, Dimitrov D, Vinyard M, Magruder D, Andersson A, Dann E, Qin Q, Otto D, Klein M, Botvinnik O, Deconinck L, Waldrant K, Rieck B, Ahlmann-Eltze C, Beltrame EDV, Benz A, González-Blas CB, Chen A, DeMeo B, Ergen C, Floc'hlay S, Gayoso A, Hicks S, Ji Y, Kleshchevnikov V, Manno G, Lombardo M, Lopez R, Righelli D, Sarkar H, Svensson V, Tong A, Xing G, Xu C, Bloom J, Pisco A, Saez-Rodriguez J, Wulsin D, Pinello L, Saeys Y, Theis F, Krishnaswamy S. Luecken M, et al. Among authors: vinyard m. Res Sq [Preprint]. 2024 Apr 4:rs.3.rs-4181617. doi: 10.21203/rs.3.rs-4181617/v1. Res Sq. 2024. PMID: 38645152 Free PMC article. Preprint.