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scPipe: an extended preprocessing pipeline for comprehensive single-cell ATAC-Seq data integration in R/Bioconductor.
NAR Genom Bioinform. 2023 Nov 30;5(4):lqad105. doi: 10.1093/nargab/lqad105. eCollection 2023 Dec.
NAR Genom Bioinform. 2023.
PMID: 38046273
Free PMC article.
Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing.
Tian L, Jabbari JS, Thijssen R, Gouil Q, Amarasinghe SL, Voogd O, Kariyawasam H, Du MRM, Schuster J, Wang C, Su S, Dong X, Law CW, Lucattini A, Prawer YDJ, Collar-Fernández C, Chung JD, Naim T, Chan A, Ly CH, Lynch GS, Ryall JG, Anttila CJA, Peng H, Anderson MA, Flensburg C, Majewski I, Roberts AW, Huang DCS, Clark MB, Ritchie ME.
Tian L, et al. Among authors: voogd o.
Genome Biol. 2021 Nov 11;22(1):310. doi: 10.1186/s13059-021-02525-6.
Genome Biol. 2021.
PMID: 34763716
Free PMC article.
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Dashboard-style interactive plots for RNA-seq analysis are R Markdown ready with Glimma 2.0.
Kariyawasam H, Su S, Voogd O, Ritchie ME, Law CW.
Kariyawasam H, et al. Among authors: voogd o.
NAR Genom Bioinform. 2021 Dec 22;3(4):lqab116. doi: 10.1093/nargab/lqab116. eCollection 2021 Dec.
NAR Genom Bioinform. 2021.
PMID: 34988439
Free PMC article.
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