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RESCRIPt: Reproducible sequence taxonomy reference database management.
Robeson MS 2nd, O'Rourke DR, Kaehler BD, Ziemski M, Dillon MR, Foster JT, Bokulich NA. Robeson MS 2nd, et al. Among authors: ziemski m. PLoS Comput Biol. 2021 Nov 8;17(11):e1009581. doi: 10.1371/journal.pcbi.1009581. eCollection 2021 Nov. PLoS Comput Biol. 2021. PMID: 34748542 Free PMC article.
Bacterial itaconate degradation promotes pathogenicity.
Sasikaran J, Ziemski M, Zadora PK, Fleig A, Berg IA. Sasikaran J, et al. Among authors: ziemski m. Nat Chem Biol. 2014 May;10(5):371-7. doi: 10.1038/nchembio.1482. Epub 2014 Mar 23. Nat Chem Biol. 2014. PMID: 24657929
Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops.
Dillon MR, Bolyen E, Adamov A, Belk A, Borsom E, Burcham Z, Debelius JW, Deel H, Emmons A, Estaki M, Herman C, Keefe CR, Morton JT, Oliveira RRM, Sanchez A, Simard A, Vázquez-Baeza Y, Ziemski M, Miwa HE, Kerere TA, Coote C, Bonneau R, Knight R, Oliveira G, Gopalasingam P, Kaehler BD, Cope EK, Metcalf JL, Robeson Ii MS, Bokulich NA, Caporaso JG. Dillon MR, et al. Among authors: ziemski m. PLoS Comput Biol. 2021 Jun 24;17(6):e1009056. doi: 10.1371/journal.pcbi.1009056. eCollection 2021 Jun. PLoS Comput Biol. 2021. PMID: 34166363 Free PMC article.
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