de Vries SJ[au] - Search Results

Year	Number of Results
1979	2
1983	1
1984	1
2001	1
2005	1
2006	2
2007	1
2008	1
2009	2
2010	3
2011	1
2012	4
2013	1
2014	1
2015	4
2016	7
2017	5
2018	1
2019	1
2021	1
2022	1
2024	1

1

ProtNAff: protein-bound Nucleic Acid filters and fragment libraries.

Moniot A, Guermeur Y, de Vries SJ, Chauvot de Beauchene I. Moniot A, et al. Among authors: de vries sj. Bioinformatics. 2022 Aug 10;38(16):3911-3917. doi: 10.1093/bioinformatics/btac430. Bioinformatics. 2022. PMID: 35775902

2

Fully Blind Peptide-Protein Docking with pepATTRACT.

Schindler CEM, de Vries SJ, Zacharias M. Schindler CEM, et al. Among authors: de vries sj. Structure. 2015 Aug 4;23(8):1507-1515. doi: 10.1016/j.str.2015.05.021. Epub 2015 Jul 2. Structure. 2015. PMID: 26146186 Free article.

3

DaReUS-Loop: a web server to model multiple loops in homology models.

Karami Y, Rey J, Postic G, Murail S, Tufféry P, de Vries SJ. Karami Y, et al. Among authors: de vries sj. Nucleic Acids Res. 2019 Jul 2;47(W1):W423-W428. doi: 10.1093/nar/gkz403. Nucleic Acids Res. 2019. PMID: 31114872 Free PMC article.

4

HIPPO: HIstogram-based Pseudo-POtential for scoring protein-ssRNA fragment-based docking poses.

Kravchenko A, de Vries SJ, Smaïl-Tabbone M, Chauvot de Beauchene I. Kravchenko A, et al. Among authors: de vries sj. BMC Bioinformatics. 2024 Mar 26;25(1):129. doi: 10.1186/s12859-024-05733-6. BMC Bioinformatics. 2024. PMID: 38532339 Free PMC article.

5

The pepATTRACT web server for blind, large-scale peptide-protein docking.

de Vries SJ, Rey J, Schindler CEM, Zacharias M, Tuffery P. de Vries SJ, et al. Nucleic Acids Res. 2017 Jul 3;45(W1):W361-W364. doi: 10.1093/nar/gkx335. Nucleic Acids Res. 2017. PMID: 28460116 Free PMC article.

6

The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes.

van Zundert GCP, Rodrigues JPGLM, Trellet M, Schmitz C, Kastritis PL, Karaca E, Melquiond ASJ, van Dijk M, de Vries SJ, Bonvin AMJJ. van Zundert GCP, et al. Among authors: de vries sj. J Mol Biol. 2016 Feb 22;428(4):720-725. doi: 10.1016/j.jmb.2015.09.014. Epub 2015 Sep 26. J Mol Biol. 2016. PMID: 26410586 Free article.

7

A web interface for easy flexible protein-protein docking with ATTRACT.

de Vries SJ, Schindler CE, Chauvot de Beauchêne I, Zacharias M. de Vries SJ, et al. Biophys J. 2015 Feb 3;108(3):462-5. doi: 10.1016/j.bpj.2014.12.015. Biophys J. 2015. PMID: 25650913 Free PMC article.

8

SeamDock: An Interactive and Collaborative Online Docking Resource to Assist Small Compound Molecular Docking.

Murail S, de Vries SJ, Rey J, Moroy G, Tufféry P. Murail S, et al. Among authors: de vries sj. Front Mol Biosci. 2021 Sep 17;8:716466. doi: 10.3389/fmolb.2021.716466. eCollection 2021. Front Mol Biosci. 2021. PMID: 34604303 Free PMC article.

9

Higher-level cognitive functions in Dutch elite and sub-elite table tennis players.

Elferink-Gemser MT, Faber IR, Visscher C, Hung TM, de Vries SJ, Nijhuis-Van der Sanden MWG. Elferink-Gemser MT, et al. Among authors: de vries sj. PLoS One. 2018 Nov 7;13(11):e0206151. doi: 10.1371/journal.pone.0206151. eCollection 2018. PLoS One. 2018. PMID: 30403711 Free PMC article.

10

The HADDOCK web server for data-driven biomolecular docking.

de Vries SJ, van Dijk M, Bonvin AM. de Vries SJ, et al. Nat Protoc. 2010 May;5(5):883-97. doi: 10.1038/nprot.2010.32. Epub 2010 Apr 15. Nat Protoc. 2010. PMID: 20431534

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