SETD2 regulates the maternal epigenome, genomic imprinting and embryonic development

…, Y Xiang, Q Wang, L Wang, J Brind'Amour, AB Bogutz… - Nature …, 2019 - nature.com
The oocyte epigenome plays critical roles in mammalian gametogenesis and embryogenesis.
Yet, how it is established remains elusive. Here, we report that histone-lysine N-…

[PDF][PDF] Maternal DNA methylation regulates early trophoblast development

MR Branco, M King, V Perez-Garcia, AB Bogutz… - Developmental cell, 2016 - cell.com
Critical roles for DNA methylation in embryonic development are well established, but less
is known about its roles during trophoblast development, the extraembryonic lineage that …

[HTML][HTML] Repression of germline genes by PRC1. 6 and SETDB1 in the early embryo precedes DNA methylation-mediated silencing

…, J Sharif, K Shirane, K Uranishi, AB Bogutz… - Nature …, 2021 - nature.com
Silencing of a subset of germline genes is dependent upon DNA methylation (DNAme) post-implantation.
However, these genes are generally hypomethylated in the blastocyst, …

[HTML][HTML] Partial loss of Ascl2 function affects all three layers of the mature placenta and causes intrauterine growth restriction

R Oh-McGinnis, AB Bogutz, L Lefebvre - Developmental biology, 2011 - Elsevier
Several imprinted genes have been implicated in the regulation of placental function and
embryonic growth. On distal mouse chromosome 7, two clusters of imprinted genes, each …

[HTML][HTML] Evolution of imprinting via lineage-specific insertion of retroviral promoters

AB Bogutz, J Brind'Amour, H Kobayashi… - Nature …, 2019 - nature.com
Imprinted genes are expressed from a single parental allele, with the other allele often
silenced by DNA methylation (DNAme) established in the germline. While species-specific …

[HTML][HTML] Impact of flanking chromosomal sequences on localization and silencing by the human non-coding RNA XIST

…, J Minks, T Dixon-McDougall, SEL Baldry, AB Bogutz… - Genome biology, 2015 - Springer
Background X-chromosome inactivation is a striking example of epigenetic silencing in
which expression of the long non-coding RNA XIST initiates the heterochromatinization and …

[HTML][HTML] DNMT1 regulates the timing of DNA methylation by DNMT3 in an enzymatic activity-dependent manner in mouse embryonic stem cells

T Ito, M Kubiura-Ichimaru, Y Murakami, AB Bogutz… - PloS one, 2022 - journals.plos.org
DNA methylation (DNAme; 5-methylcytosine, 5mC) plays an essential role in mammalian
development, and the 5mC profile is regulated by a balance of opposing enzymatic activities: …

[HTML][HTML] Transcription factor ASCL2 is required for development of the glycogen trophoblast cell lineage

AB Bogutz, R Oh-McGinnis, KJ Jacob, R Ho-Lau… - PLoS …, 2018 - journals.plos.org
The basic helix-loop-helix (bHLH) transcription factor ASCL2 plays essential roles in diploid
multipotent trophoblast progenitors, intestinal stem cells, follicular T-helper cells, as well as …

Tissue-specific alternative polyadenylation at the imprinted gene Mest regulates allelic usage at Copg2

JL MacIsaac, AB Bogutz, AS Morrissy… - Nucleic acids …, 2012 - academic.oup.com
The gene Mest (also known as Peg1 ) is regulated by genomic imprinting in the mouse and
only the paternal allele is active for transcription. MEST is similarly imprinted in humans, …

[HTML][HTML] Development and application of an integrated allele-specific pipeline for methylomic and epigenomic analysis (MEA)

…, T Koike, H Younesy, R Thompson, AB Bogutz… - Bmc Genomics, 2018 - Springer
Background Allele-specific transcriptional regulation, including of imprinted genes, is essential
for normal mammalian development. While the regulatory regions controlling imprinted …