Next-generation proteomics: towards an integrative view of proteome dynamics
Next-generation sequencing allows the analysis of genomes, including those representing
disease states. However, the causes of most disorders are multifactorial, and systems-level …
disease states. However, the causes of most disorders are multifactorial, and systems-level …
Trends in ultrasensitive proteomics
AFM Altelaar, AJR Heck - Current opinion in chemical biology, 2012 - Elsevier
Here we review recent developments and trends in sample preparation, pre-fractionation,
chromatography and mass spectrometry contributing towards the ultra-sensitive global …
chromatography and mass spectrometry contributing towards the ultra-sensitive global …
Improved peptide identification by targeted fragmentation using CID, HCD and ETD on an LTQ-Orbitrap Velos
CK Frese, AFM Altelaar, ML Hennrich… - Journal of proteome …, 2011 - ACS Publications
Over the past decade peptide sequencing by collision induced dissociation (CID) has
become the method of choice in mass spectrometry-based proteomics. The development of …
become the method of choice in mass spectrometry-based proteomics. The development of …
Toward full peptide sequence coverage by dual fragmentation combining electron-transfer and higher-energy collision dissociation tandem mass spectrometry
Increasing peptide sequence coverage by tandem mass spectrometry improves confidence
in database search-based peptide identification and facilitates mapping of post-translational …
in database search-based peptide identification and facilitates mapping of post-translational …
Gold-enhanced biomolecular surface imaging of cells and tissue by SIMS and MALDI mass spectrometry
AFM Altelaar, I Klinkert, K Jalink… - Analytical …, 2006 - ACS Publications
Surface metallization by plasma coating enhances desorption/ionization of membrane
components such as lipids and sterols in imaging time-of-flight secondary ion mass spectrometry (…
components such as lipids and sterols in imaging time-of-flight secondary ion mass spectrometry (…
[PDF][PDF] Microtubule minus-end stabilization by polymerization-driven CAMSAP deposition
…, KW Yau, Q Liu, EA Katrukha, AFM Altelaar… - Developmental cell, 2014 - cell.com
Microtubules are cytoskeletal polymers with two structurally and functionally distinct ends,
the plus- and the minus-end. Here, we focus on the mechanisms underlying the regulation of …
the plus- and the minus-end. Here, we focus on the mechanisms underlying the regulation of …
Unambiguous phosphosite localization using electron-transfer/higher-energy collision dissociation (EThcD)
We recently introduced a novel scheme combining electron-transfer and higher-energy
collision dissociation (termed EThcD), for improved peptide ion fragmentation and identification. …
collision dissociation (termed EThcD), for improved peptide ion fragmentation and identification. …
[PDF][PDF] TRIM46 controls neuronal polarity and axon specification by driving the formation of parallel microtubule arrays
…, L Slenders, S Doulkeridou, PS Smitt, AFM Altelaar… - Neuron, 2015 - cell.com
Axon formation, the initial step in establishing neuronal polarity, critically depends on local
microtubule reorganization and is characterized by the formation of parallel microtubule …
microtubule reorganization and is characterized by the formation of parallel microtubule …
Coordination of peptidoglycan synthesis and outer membrane constriction during Escherichia coli cell division
10.7554/eLife.07118.001 To maintain cellular structure and integrity during division, Gram-negative
bacteria must carefully coordinate constriction of a tripartite cell envelope of inner …
bacteria must carefully coordinate constriction of a tripartite cell envelope of inner …
Protein acetylation affects acetate metabolism, motility and acid stress response in Escherichia coli
Although protein acetylation is widely observed, it has been associated with few specific
regulatory functions making it poorly understood. To interrogate its functionality, we analyzed …
regulatory functions making it poorly understood. To interrogate its functionality, we analyzed …