Next-generation proteomics: towards an integrative view of proteome dynamics

AFM Altelaar, J Munoz, AJR Heck - Nature Reviews Genetics, 2013 - nature.com
Next-generation sequencing allows the analysis of genomes, including those representing
disease states. However, the causes of most disorders are multifactorial, and systems-level …

Trends in ultrasensitive proteomics

AFM Altelaar, AJR Heck - Current opinion in chemical biology, 2012 - Elsevier
Here we review recent developments and trends in sample preparation, pre-fractionation,
chromatography and mass spectrometry contributing towards the ultra-sensitive global …

Improved peptide identification by targeted fragmentation using CID, HCD and ETD on an LTQ-Orbitrap Velos

CK Frese, AFM Altelaar, ML Hennrich… - Journal of proteome …, 2011 - ACS Publications
Over the past decade peptide sequencing by collision induced dissociation (CID) has
become the method of choice in mass spectrometry-based proteomics. The development of …

Toward full peptide sequence coverage by dual fragmentation combining electron-transfer and higher-energy collision dissociation tandem mass spectrometry

CK Frese, AFM Altelaar, H van den Toorn… - Analytical …, 2012 - ACS Publications
Increasing peptide sequence coverage by tandem mass spectrometry improves confidence
in database search-based peptide identification and facilitates mapping of post-translational …

Gold-enhanced biomolecular surface imaging of cells and tissue by SIMS and MALDI mass spectrometry

AFM Altelaar, I Klinkert, K Jalink… - Analytical …, 2006 - ACS Publications
Surface metallization by plasma coating enhances desorption/ionization of membrane
components such as lipids and sterols in imaging time-of-flight secondary ion mass spectrometry (…

[PDF][PDF] Microtubule minus-end stabilization by polymerization-driven CAMSAP deposition

…, KW Yau, Q Liu, EA Katrukha, AFM Altelaar… - Developmental cell, 2014 - cell.com
Microtubules are cytoskeletal polymers with two structurally and functionally distinct ends,
the plus- and the minus-end. Here, we focus on the mechanisms underlying the regulation of …

Unambiguous phosphosite localization using electron-transfer/higher-energy collision dissociation (EThcD)

CK Frese, H Zhou, T Taus, AFM Altelaar… - Journal of proteome …, 2013 - ACS Publications
We recently introduced a novel scheme combining electron-transfer and higher-energy
collision dissociation (termed EThcD), for improved peptide ion fragmentation and identification. …

[PDF][PDF] TRIM46 controls neuronal polarity and axon specification by driving the formation of parallel microtubule arrays

…, L Slenders, S Doulkeridou, PS Smitt, AFM Altelaar… - Neuron, 2015 - cell.com
Axon formation, the initial step in establishing neuronal polarity, critically depends on local
microtubule reorganization and is characterized by the formation of parallel microtubule …

Coordination of peptidoglycan synthesis and outer membrane constriction during Escherichia coli cell division

…, A Colavin, A Koumoutsi, J Biboy, AFM Altelaar… - elife, 2015 - elifesciences.org
10.7554/eLife.07118.001 To maintain cellular structure and integrity during division, Gram-negative
bacteria must carefully coordinate constriction of a tripartite cell envelope of inner …

Protein acetylation affects acetate metabolism, motility and acid stress response in Escherichia coli

…, U Sauer, AJR Heck, AFM Altelaar… - Molecular systems …, 2014 - embopress.org
Although protein acetylation is widely observed, it has been associated with few specific
regulatory functions making it poorly understood. To interrogate its functionality, we analyzed …