GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens
Current methods struggle to reconstruct and visualize the genomic relationships of large
numbers of bacterial genomes. GrapeTree facilitates the analyses of large numbers of allelic …
numbers of bacterial genomes. GrapeTree facilitates the analyses of large numbers of allelic …
[HTML][HTML] Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach
Background Multilocus Sequence Typing (MLST) is a frequently used typing method for the
analysis of the clonal relationships among strains of several clinically relevant microbial …
analysis of the clonal relationships among strains of several clinically relevant microbial …
[HTML][HTML] PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods
AP Francisco, C Vaz, PT Monteiro, J Melo-Cristino… - BMC …, 2012 - Springer
Background With the decrease of DNA sequencing costs, sequence-based typing methods
are rapidly becoming the gold standard for epidemiological surveillance. These methods …
are rapidly becoming the gold standard for epidemiological surveillance. These methods …
PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods
…, A Sousa, M Ramirez, AP Francisco… - …, 2017 - academic.oup.com
High Throughput Sequencing provides a cost effective means of generating high resolution
data for hundreds or even thousands of strains, and is rapidly superseding methodologies …
data for hundreds or even thousands of strains, and is rapidly superseding methodologies …
[HTML][HTML] Commensal bacteria and essential amino acids control food choice behavior and reproduction
…, Z Carvalho-Santos, AP Francisco… - PLoS …, 2017 - journals.plos.org
… Our finding that Ap acts together with Lactobacilli to influence food choice provides a powerful
system for not only understanding how microbes act on the host to influence brain function …
system for not only understanding how microbes act on the host to influence brain function …
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae
The YEASTRACT ( http://www.yeastract.com ) information system is a tool for the analysis
and prediction of transcription regulatory associations in Saccharomyces cerevisiae. Last …
and prediction of transcription regulatory associations in Saccharomyces cerevisiae. Last …
Anxiety, depression and stress during the COVID-19 pandemic: results from a cross-sectional survey
…, B Patterson, W Simpson, AP Francisco… - Journal of psychiatric …, 2021 - Elsevier
Background Multiple survey studies have demonstrated a mental health (MH) burden of
COVID-19 globally. However, few studies have examined relevant risk factors for pandemic-…
COVID-19 globally. However, few studies have examined relevant risk factors for pandemic-…
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface
…, SC Dos Santos, TR Cabrito, AP Francisco… - Nucleic acids …, 2010 - academic.oup.com
The YEAst Search for Transcriptional Regulators And Consensus Tracking (YEASTRACT)
information system ( http://www.yeastract.com ) was developed to support the analysis of …
information system ( http://www.yeastract.com ) was developed to support the analysis of …
Design and discovery of mushroom tyrosinase inhibitors and their therapeutic applications
Introduction: Tyrosinase inhibitors could have a huge importance in medicine, cosmetics
and agriculture. Although many tyrosinase inhibitors are available, they have demonstrated …
and agriculture. Although many tyrosinase inhibitors are available, they have demonstrated …
[HTML][HTML] Metabolic cross-feeding in imbalanced diets allows gut microbes to improve reproduction and alter host behaviour
…, DB Dhakan, L Serra, AP Francisco… - Nature …, 2020 - nature.com
… in Drosophila melanogaster, Acetobacter pomorum (Ap) and Lactobacillus plantarum (Lp) a
… Ap as the bacterium altering the host’s feeding decisions. Specifically, we show that Ap uses …
… Ap as the bacterium altering the host’s feeding decisions. Specifically, we show that Ap uses …