Five different algorithms have been applied for detecting DNA sequence pattern hidden in
204 DNA sequences collected from the literature which are experimentally found to be …

The principal sequence feature responsible for intrinsic DNA curvature is generally assumed
to be runs of adenines. However, according to the wedge model of DNA curvature, each …

Retroviruses and LTR retrotransposons comprise two long-terminal repeats (LTRs) bounding
a central domain that encodes the products needed for reverse transcription, packaging, …

Software is presented to plot the sequence-dependent spatial trajectory of the DNA double
helix and/or distribution of curvature along the DNA molecule. The nearest-neighbor wedge …

Motivation: One of the major features of genomic DNA sequences, distinguishing them from
texts in most spoken or artificial languages, is their high repetitiveness. Variation in the …

This is a review of the methods based on counting oligomers in nucleotide and amino acid
sequences. Such methods are analogous to the formal linguistic analysis of human texts. This …

This paper is devoted to the techniques of clustering of texts based on the comparison of
vocabularies of N-grams. In contrast to the regular N-grams approach, the proposed N-grams …

Knighting in sequence biology Edward N. Trifonov Genome classification, construction of
phylogenetic trees, became today a major approach in studying evolutionary relatedness of …

A linguistic complexity measure was applied to the complete genomes of HIV-1, Escherichia
coli, Bacillus subtilis, Haemophilus influenzae, Mycoplasma genitalium, and to long human …

In certain curved DNA fragments without AA dinucleotides, the gel retardation anomaly
associated with curvature passes through a maximum with fragment length, indicating length (…