DNA compaction: fundamentals and applications
A Estévez-Torres, D Baigl - Soft Matter, 2011 - pubs.rsc.org
Compaction is the process in which a large DNA molecule undergoes a transition between
an elongated conformation and a very compact form. In nature, DNA compaction occurs to …
an elongated conformation and a very compact form. In nature, DNA compaction occurs to …
Spatial waves in synthetic biochemical networks
A Padirac, T Fujii, A Estévez-Torres… - Journal of the American …, 2013 - ACS Publications
We report the experimental observation of traveling concentration waves and spirals in a
chemical reaction network built from the bottom up. The mechanism of the network is an …
chemical reaction network built from the bottom up. The mechanism of the network is an …
Microscopic agents programmed by DNA circuits
…, AS Zadorin, JC Galas, T Fujii, A Estevez-Torres… - Nature …, 2017 - nature.com
Abstract Information stored in synthetic nucleic acids sequences can be used in vitro to create
complex reaction networks with precisely programmed chemical dynamics. Here, we scale …
complex reaction networks with precisely programmed chemical dynamics. Here, we scale …
Quadruplex-based molecular beacons as tunable DNA probes
A Bourdoncle, A Estevez Torres, C Gosse… - Journal of the …, 2006 - ACS Publications
Molecular beacons (MBs) are fluorescent nucleic acid probes with a hairpin-shaped structure
in which the 5‘ and 3‘ ends are self-complementary. Due to a change in their emissive …
in which the 5‘ and 3‘ ends are self-complementary. Due to a change in their emissive …
Synthesis of programmable reaction-diffusion fronts using DNA catalyzers
AS Zadorin, Y Rondelez, JC Galas, A Estevez-Torres - Physical review letters, 2015 - APS
We introduce a DNA-based reaction-diffusion (RD) system in which reaction and diffusion
terms can be precisely and independently controlled. The effective diffusion coefficient of an …
terms can be precisely and independently controlled. The effective diffusion coefficient of an …
Synthesis and materialization of a reaction–diffusion French flag pattern
…, G Urtel, A Zambrano, JC Galas, A Estevez-Torres - Nature …, 2017 - nature.com
During embryo development, patterns of protein concentration appear in response to morphogen
gradients. These patterns provide spatial and chemical information that directs the fate …
gradients. These patterns provide spatial and chemical information that directs the fate …
Sequence-independent and reversible photocontrol of transcription/expression systems using a photosensitive nucleic acid binder
A Estévez-Torres, C Crozatier… - Proceedings of the …, 2009 - National Acad Sciences
To understand non-trivial biological functions, it is crucial to develop minimal synthetic
models that capture their basic features. Here, we demonstrate a sequence-independent, …
models that capture their basic features. Here, we demonstrate a sequence-independent, …
Tunable corrugated patterns in an active nematic sheet
Active matter locally converts chemical energy into mechanical work and, for this reason, it
provides new mechanisms of pattern formation. In particular, active nematic fluids made of …
provides new mechanisms of pattern formation. In particular, active nematic fluids made of …
High-throughput and long-term observation of compartmentalized biochemical oscillators
…, M Leocmach, AJ Genot, A Estévez-Torres… - Chemical …, 2013 - pubs.rsc.org
We report the splitting of an oscillating DNA circuit into ∼700 droplets with picoliter volumes.
Upon incubation at constant temperature, the droplets display sustained oscillations that …
Upon incubation at constant temperature, the droplets display sustained oscillations that …
Observing and controlling the folding pathway of DNA origami at the nanoscale
DNA origami is a powerful method to fold DNA into rationally designed nanostructures that
holds great promise for bionanotechnology. However, the folding mechanism has yet to be …
holds great promise for bionanotechnology. However, the folding mechanism has yet to be …