Metagenomics is a segment of conventional microbial genomics dedicated to the sequencing
and analysis of combined genomic DNA of entire environmental samples. The most critical …

SPAdes—St. Petersburg genome Assembler—was originally developed for de novo assembly
of genome sequencing data produced for cultivated microbial isolates and for single‐cell …

Recent advances in single-cell genomics provide an alternative to largely gene-centric
metagenomics studies, enabling whole-genome sequencing of uncultivated bacteria. However, …

Singular spectrum analysis (SSA) is a well-known methodology for analysis and forecasting
of time series. Since quite recently, SSA was also used to analyze digital images and other …

Recent advances in single-cell genomics provide an alternative to gene-centric metagenomics
studies, enabling whole genome sequencing of uncultivated bacteria. However, single-…

Motivation: Recent advances in single molecule real-time (SMRT) and nanopore sequencing
technologies have enabled high-quality assemblies from long and inaccurate reads. …

MGnify ( http://www.ebi.ac.uk/metagenomics ) provides a free to use platform for the
assembly, analysis and archiving of microbiome data derived from sequencing microbial …

Public databases contain a planetary collection of nucleic acid sequences, but their systematic
exploration has been inhibited by a lack of efficient methods for searching this corpus, …

Error correction of sequenced reads remains a difficult task, especially in single-cell
sequencing projects with extremely non-uniform coverage. While existing error correction tools …

While metagenomics has emerged as a technology of choice for analyzing bacterial
populations, the assembly of metagenomic data remains challenging, thus stifling biological …